Protein Info for HMPREF1058_RS15220 in Phocaeicola vulgatus CL09T03C04

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 367 to 384 (18 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 293 (280 residues), 124.5 bits, see alignment E=4.8e-40 amino acids 277 to 387 (111 residues), 48.5 bits, see alignment E=6.5e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2236)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UHL9 at UniProt or InterPro

Protein Sequence (398 amino acids)

>HMPREF1058_RS15220 MFS transporter (Phocaeicola vulgatus CL09T03C04)
MKDKLITKNYIEILAANFLLFFGFWLLMPVLPFYLAEVFDANKTTIGAVLSCYTIAALCI
RPFSGYLLDTFARKPLYLLAYFTFTAIFGGYLIAGTLTLFILFRIIHGVSFGMVTVSGNT
IVIDIMPSSRRGEGLGYYGLANNIAMSIGPMTGLFLHDAGADYTLIFCCSLGSCLIGFLC
ASLVKTTYKPPVKREPISLDRFILLKGIPAGFSLLLLSIPYGMTTNYVAMYAKQIGIQAS
TGFFFTFMALGMAVSRLFSGRLVDRGMVTQVIETGLYLVCFCFFGLSSCGWLTTWSLQWT
TYFLFTIALLLGIGFGTMFPAYNTLFVNLAPNNQRGTATSTYLTSWDVGIGAGMLLGGYI
AEIATFKMAYLFGAALTVISLFYFRSKVAPHFHRHKLR