Protein Info for HMPREF1058_RS15195 in Phocaeicola vulgatus CL09T03C04
Annotation: family 43 glycosylhydrolase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K06113, arabinan endo-1,5-alpha-L-arabinosidase [EC: 3.2.1.99] (inferred from 99% identity to bvu:BVU_2231)Predicted SEED Role
"Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)" in subsystem L-Arabinose utilization (EC 3.2.1.99)
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.2.1.99
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I9A3Y9 at UniProt or InterPro
Protein Sequence (333 amino acids)
>HMPREF1058_RS15195 family 43 glycosylhydrolase (Phocaeicola vulgatus CL09T03C04) MRKNLILSICFCLVSCSSSSAQEEIPDGDKTSYYWNPVIDYSLPDPTIIEGGDGYYYLYA TEDIRNLPIHRSKDLINWEWVGTAFTDRTRPDFEPGGGLWAPDINKIGDTYVLYYSMSKW GGEWTCGIGCATADKLSGPFKDHGLMFRSNEINVQNSIDPFYIEDAGKKFLFWGSFRGIY GIELSEDGLSIKQGKKPRQVAGTAYEGTYIHKKEGFYYFFASIGTCCEGLNSTYTTVVAR SENLFGPYVDKNGRTMMDNQHEVLIHKNSSFVGTGHNSEIVTDKVGNDWVFYHAVVTKHP EGRVLMMDKISWKDGWPVVATDSPSLKSEKPVL