Protein Info for HMPREF1058_RS14435 in Phocaeicola vulgatus CL09T03C04

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1105 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF16344: FecR_C" amino acids 48 to 113 (66 residues), 26.9 bits, see alignment 9.8e-10 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 123 to 1105 (983 residues), 805.5 bits, see alignment E=9e-246 PF13715: CarbopepD_reg_2" amino acids 125 to 208 (84 residues), 61.4 bits, see alignment 1.7e-20 PF07715: Plug" amino acids 216 to 325 (110 residues), 67 bits, see alignment E=4.9e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 301 to 331 (31 residues), 66.1 bits, see alignment (E = 1.8e-22) PF00593: TonB_dep_Rec" amino acids 476 to 889 (414 residues), 84.5 bits, see alignment E=3.9e-27

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_1980)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A261 at UniProt or InterPro

Protein Sequence (1105 amino acids)

>HMPREF1058_RS14435 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola vulgatus CL09T03C04)
MKRNELWKSLVAKPPKMRFLVMLMCIFCTFNAVFANVSADKTVTIKSENISVKEALNMVK
KQTGINIMYEDATLNNVPLKLTLNKEPLEQALSVICSQAGMRYELVENNYVLILPIDRNA
KRRTITGVIKDDTGEPVIGASIVIQGTTFGTVANMDGQFMLSYPENTKNDELMISFIGMQ
TVKEKIGNRHVFNVKMESEVTNLDEVVVVGYGTSSIKDLTGSVASVGLKQLSQLNTPNVT
SMLQNLAAGVQVSQNTGVPGETVRVRVRGATSLTGSNEPLYVIDGVPVEDPSMLDAISPN
DIQSMDVLKDASAAAIYGSRAANGVVIVTTKKGVEGSKPTVSFNYNVTTDVQIKNFRILY
GDEWRETVRRFAKETLVYDPSNQYALEILEPNSTALGSANTNWFDEVKQTAIRHNADLTV
SGGSKVSKYLISLSVFDQQGMVKGGDLSRYNARVSTEMNVLPILRFGINANMSYTDQNNA
NTSLFSAQGFRPDLPIYNDNGEFDMSTGQANPVANTYKKNHDNIYRIMGTVYGEVDIWKG
FRFRSSLSGNLQFTENNSFSPSFLSTRNEASGSEYHYKYSKTVFDNTLNYNYEFNKNHVL
DAVAGISFERGISRSTRMNGQTYPDNDIYTNLGSAASISSWGNGYNASGLFSSFARINYK
LMERYLFTFTGRYDGSSMFGSNNRYGFFPSGAIAWRISQEKFMKNLTFINDLKLRASVGT
TGTQNLTSFSNRDLYEATSYNNLSAIIHKQVGNRDIRWEKSTQYDLGLDFALFDYRLTGS
ISGYIKDTKDLIWSFDFPPSATGGSMQMNRNIGALTNRGIEINLVGRVLSTKDWNLDLTL
NMSHNKNKVTKLVEEGRAQSAMDVVVQGSYADQVLAVGYPMGAFHGYEYAGIIQDQARID
ELNAYAKSKGQSYYDGNSLKPGHLEIKDLNGDGIINYNDRVIIGNPDPDLFGGLTANLSY
KQFSLFANFGYQIGGLKIYNKTLQNLPGQLTGLIDYGLNDRWSDTNKDAKYPALYIGDGV
PRLTDHELFNASFFRLQEVRLTYNLPLNKVIKGQLFVSATNLFTLTSYPGTDPATVNSNS
NYGGNYETSTYPGFRSFSAGLKINL