Protein Info for HMPREF1058_RS13845 in Phocaeicola vulgatus CL09T03C04

Annotation: ribosome recycling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 TIGR00496: ribosome recycling factor" amino acids 12 to 186 (175 residues), 202.7 bits, see alignment E=1.8e-64 PF01765: RRF" amino acids 22 to 184 (163 residues), 217.2 bits, see alignment E=6e-69

Best Hits

Swiss-Prot: 100% identical to RRF_BACV8: Ribosome-recycling factor (frr) from Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)

KEGG orthology group: K02838, ribosome recycling factor (inferred from 100% identity to bvu:BVU_1867)

Predicted SEED Role

"Ribosome recycling factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A2G7 at UniProt or InterPro

Protein Sequence (186 amino acids)

>HMPREF1058_RS13845 ribosome recycling factor (Phocaeicola vulgatus CL09T03C04)
MIDAKTCINDAQEKMDMAVMYLEEALAHIRAGKASTRLLDGIRVDSYGSMVPISNVAAVT
TPDARSIAIKPWDKSMFRIIEKAIMDSDLGITPENNGEIIRLGIPPLTEERRKQLAKQCK
GEGETAKVSIRNARRDAIDTLKKAVKEGMPEDEQKNAEAKLQKVHDKYIAKIEELLAEKD
KEIMTV