Protein Info for HMPREF1058_RS13825 in Phocaeicola vulgatus CL09T03C04

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1011 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 335 to 352 (18 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 410 (26 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details amino acids 462 to 485 (24 residues), see Phobius details amino acids 525 to 545 (21 residues), see Phobius details amino acids 844 to 864 (21 residues), see Phobius details amino acids 871 to 891 (21 residues), see Phobius details amino acids 897 to 922 (26 residues), see Phobius details amino acids 943 to 963 (21 residues), see Phobius details amino acids 974 to 998 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1000 (998 residues), 973 bits, see alignment E=1.7e-296 PF03176: MMPL" amino acids 333 to 486 (154 residues), 25.3 bits, see alignment E=7.1e-10 amino acids 810 to 1003 (194 residues), 41.2 bits, see alignment E=1e-14

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 100% identity to bvu:BVU_1863)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9A2H3 at UniProt or InterPro

Protein Sequence (1011 amino acids)

>HMPREF1058_RS13825 efflux RND transporter permease subunit (Phocaeicola vulgatus CL09T03C04)
MNISELSIRRPVLATVLTIIILLFGLIGYNTLGVREYPSVDNPIISVTCSYSGANADVIE
NQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKVSRAQRYLP
RDCDPPTVSKADADATPILMVAIQSDSRSLLELSEIADLTVKEQLQTISDVSSVSIWGEK
RYSMRLWLDPTKMAGYGITPVDVKNAITNENIELPSGSIEGNTVELTLRTMGQMHTAKEF
NNIILKEVGGRVVRFSDIGYAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVY
QRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFLRDWRVTLI
PCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENIYIRIERGMRPF
EAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSVIISSFAALTF
TPMLATKLLIKREKQGWFYQKTEPFFEGMNRIYARSLNAFLKRRIWAIPVTVIMLIAIGV
LWVQIPAEMAPMEDRSQISINTRAAEGASYEYIRDYTEDINNLVDSIIPDAESVTARVSS
GSGNIRITLKDIKDRDYTQMEVAERISQAIRNKTKARAFVQQQSSFGGRRGSMPVQYVLQ
AVSIEKLEKVLPAFLSKVYDNPTFQMADVDLKFSSPEMRVNINRDKAGTMGATVRDIAET
LQYGLSGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVE
SVAPPKLYHYNRFISATVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRE
SSSSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQ
IGIIMLIGLVAKNGILIVEFANQKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPL
AFATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKTETV