Protein Info for HMPREF1058_RS12755 in Phocaeicola vulgatus CL09T03C04

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 949 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF16378: DUF4988" amino acids 26 to 90 (65 residues), 31.4 bits, see alignment 8.1e-12 amino acids 91 to 150 (60 residues), 33.2 bits, see alignment 2.3e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to bvu:BVU_1478)

Predicted SEED Role

"FIG00410216: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UED6 at UniProt or InterPro

Protein Sequence (949 amino acids)

>HMPREF1058_RS12755 hypothetical protein (Phocaeicola vulgatus CL09T03C04)
MNKKFLSAILFGALMVTSTGTFVSCKDYDDDIDRIDKELSEVKETIASLDSAIKAGKFVQ
SCNEVTGGYELVFTDGSKITIKNGTNGTDGAAGTTVIPEFRVEGNYWQVSTDKGATWVDV
KDTEGNKVPARGQDGEAAGSNVSWVTVDGVEYIKIGDKVTDLKQNNEFPNIAVDAESKTV
IVTIDGQNYTLLQEGSAFKGLQTVVYRKQAVDDASDICKAYDIYWMENEGSLNPDKDVLF
ASVPAYASFKVYPGDFSLNNAKFSFVDTYQVRSVAPALTYMEGSAKLENGILSLAILPNE
GIGNNTYATSLDVTMYGQYTSASDYFTVSRTHASVKSIVNAFTSTNMKEDEYPAIINADG
ASYDGKSYGCFDYQGVYNVNDSIDAYISGAAKVWLKSTNISYTRVFRLLDQNEDYTFNGQ
PIKTRQGIFDFKDNVLSVKSTNQASAIDEYAAIEVTTTVKPQEEGVKEYEVKNVVFIKAV
RPAVNPVFGTVALKPLDAKENFTFAYNSSKARIITLDVRNFEAAIEGRDVISNKNQEYCT
FITLNKPVYDAGGKLMKYESISDDCNQYYQNNNLSTSIPAKVTDLAKALETVKNEAVLYY
KNGGNNADKDSLFLILTPGANFAQFKNMSLLAGASSYYPGWGATEKMTNGVNTPYAVYNS
FVNKLFKVSVDNFSVTYNFDCPIKDEYKSRTIIGTWTKTGGAYSKFIMESNYFDKMYNVV
PEDATVEFELDYKKQNAYVQEMMKEQNGIKNIEWTSTNQIVFTPRVDLAKVGTLKVDIYD
ATAGSAKRVLFATEDWKVEQPILAFTDVVDLKYNNPALATNDQIKIIDLINALGAADKKK
WTELTLKDAVKNVLVKYNATTIAAEETIAETLYRKDAAGNAVAEATGLEISLDENEKDFT
YDAATATLTWKGTPEGTVYTHDVNLNITYTHNWGVVTKTFKVTVTRKVQ