Protein Info for HMPREF1058_RS12645 in Phocaeicola vulgatus CL09T03C04

Annotation: outer membrane beta-barrel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 768 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 21 to 107 (87 residues), 34.3 bits, see alignment E=2.9e-12 PF14905: OMP_b-brl_3" amino acids 366 to 746 (381 residues), 201.4 bits, see alignment E=4e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1454)

Predicted SEED Role

"FIG00403771: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UDK5 at UniProt or InterPro

Protein Sequence (768 amino acids)

>HMPREF1058_RS12645 outer membrane beta-barrel protein (Phocaeicola vulgatus CL09T03C04)
MYLVMLVVSMLLPMRVSAQTVKGKLVDESNHPLPYANVVLLFLPDSAFVSGTISGEDGLF
KLEATSVNQIVKISSIGYKTVYKPTTPANMGIVQLVSDARMLGEVVVKANLPVTRIKNDA
LETNVQGTVLSKAGTAEDVLAHIPGLQKKADGFEVLGKGSPLIYINGRKLRDIAELDQLT
SEEIKSVEVVRNPGARYDATVGAVVRIRTVKRQGDGFGVSLRSSYDQSQNSDFVEQADVN
YRHNGLDVFAMVRFDKTTSLQNDILEQTAFTDTIWTQKNYQHSNTDSRSIDGRIGFNYDF
NEYHSIGVRYDLSNALHTDMFTAFDSEIQADGLPYDILYSTIAADAKSQPEHQLNIYYAG
QIGKGELTWDADYYSNTYTQYTINMENSQDHEDRTVTSDNRVENQLTATKVSYTHPLWGG
SISVGGEYTYTNRHDDYVNQEGYVPTTYTRIREQNLAGYAQYSHPLPFGQANIGLRYEHV
DFDYFENATFVPGQSRVYDNIFPNISVNGQLGKVQFQVSYAAKTQRPNYSQLRNNITYAN
RFTWQTGNPLLKPSVTHDITAVGVWRFFQAMVSYKVLRDYILYWGTQVENQSATTLINYI
NHDRLPSLTVMLAASPTIGVWNLNASAIVMKQWFSLDAAGQRRTYNNPLFVGSLNNTFTL
PAGFLLSADFNYQSRGQVQNITLKRPQYTLNIGLRKSLFNDALSIEARANDLLLGCKQEA
LLYMESAQMKDLSWSDTRSFSLTVRYKFNAAKSKYKGTGAGQDTINRM