Protein Info for HMPREF1058_RS12015 in Phocaeicola vulgatus CL09T03C04

Annotation: outer membrane beta-barrel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF14905: OMP_b-brl_3" amino acids 291 to 670 (380 residues), 160.3 bits, see alignment E=4.2e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1315)

Predicted SEED Role

"Outer membrane receptor proteins, mostly Fe transport" in subsystem Hemin transport system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UD01 at UniProt or InterPro

Protein Sequence (690 amino acids)

>HMPREF1058_RS12015 outer membrane beta-barrel protein (Phocaeicola vulgatus CL09T03C04)
MRTVIIFCLCLSAFATQAQNDVSYTYMDSLFQQLPEVLVKGERPVVKAERGKLVYDLPRM
VERLPVNNAYEAVKELPGIVEQDGNLTLGGRSITLVVNGKVSTLDKDDLKSVLQNTPVSR
LEKAEIMYAAPARYRIRGAMVNVILKSNIGQKPSWSGEVAAMYEQSRREDIAGRGNLLYT
SRRFSADVMYSYGFKHTTFGLDKQSWHTMAGDVHELDLKTEAKGYGGRHNLRLGADYDFG
KKNLLSVVYNTQYRYGQDCTKMRGTAHSDKTDDGDRQLHNVAADYQSSFGLSAGMDFLFF
SNPSQTFLEKDMQDVSRTLNYDSNQRINRWLFYANQLHSLQGGTEINYGVKYTATHDNSY
QFYRDGETGALIPDNSEKLLRKEYTLNMYTGASHSFGKKFSAEVSLAAELYHAGERHSWM
LYPTVNTTYTPADGHTLQMSFTSNRKYPAYWQLQPIIQYVDSYTEAHGNPDLKPSSNYSL
DLNYLYKNRYMIGVNYNYTPDYFVQLPYQLPDRLAEVNQFVNYDFQKRWTIQTMASYKVS
TWWNGRIFAFGLFSHDKNSHFHDIAFNRHKFSVILNTTNTFILSKKPNIIGTLAGFYQSR
AIQGVYNLSPICNVSTSLQWASPDGKTKVILKGNDILNTSNMTTRLAWGQQRNRTEMNWD
NRSFTFSFLYKFGGYKEKKRTDVDTKRLGR