Protein Info for HMPREF1058_RS11765 in Phocaeicola vulgatus CL09T03C04

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14322: SusD-like_3" amino acids 100 to 214 (115 residues), 50.3 bits, see alignment E=3.6e-17 PF07980: SusD_RagB" amino acids 312 to 613 (302 residues), 190.8 bits, see alignment E=4.6e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1265)

Predicted SEED Role

"Putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UBS6 at UniProt or InterPro

Protein Sequence (613 amino acids)

>HMPREF1058_RS11765 RagB/SusD family nutrient uptake outer membrane protein (Phocaeicola vulgatus CL09T03C04)
MKKRNILLGLALAFCFTACYDLDKMPEGVLSTAEPFRSTGEIRNYIDRYYEFGVRTQGFM
AGGGGGIAGNDVNSDNLASAAVNSRLMGLTSLSNAVALDNYTHIRNINFLINNAGDCPEK
GSVEYNHLMGEAYYFRAWFYYSMFSDYGRLAWVDTPLEPNLEVMMLPRESRTFIADKILA
DLDMAISLMKEQNNSSSMRLHKDVARALKSEVALFEATWEKWHYAKEKNKPEKFYDTELG
EAELMAKIDNYLDQSIAAAEEVRQRGVWKIYNTGNVENDYRSIFETPDLTANPEILWFKM
YDGDQVGNSVTRYLNTGGGNVGVTASLVDDYLTIDGRPLVGKELLDAKRVYPTELLPTVR
DPRLSQTVALPGQRMQPAGAGNPYVVGFPSLAGDGSAFGTNMTGYVMLKHVQIDYTGDYI
SEYKGSTPAIQFRYADVLLNYAEALAEKNGAANAGKIIEILHPLRERAGMPDIDFDREYN
TSAEYPFRNLDKYIQAVRRERRVEKALEGRRVFDIMRWAAAEELIIGNRAHGALFIGSNL
PEQYGPELKYDQASGNNMFLTGSPDDAERYILPVPPSTMPNGWQFKPNRDYLLPIQERMI
NVMDGMWEQNPGW