Protein Info for HMPREF1058_RS11710 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 33 to 114 (82 residues), 68.9 bits, see alignment 4.2e-23 PF13715: CarbopepD_reg_2" amino acids 33 to 125 (93 residues), 46.8 bits, see alignment E=2.4e-16

Best Hits

KEGG orthology group: None (inferred from 68% identity to pdi:BDI_2527)

Predicted SEED Role

"FIG00896458: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9IZX8 at UniProt or InterPro

Protein Sequence (1067 amino acids)

>HMPREF1058_RS11710 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MKILIESKRFLLLLCLSLFVAGYVSAQDYRAIVKGIVTDETGEGVIGATVLVKNESTGFS
AGSITNETGEYIVKQLPLGSPYSVTVSYVGYGDQKKTGYTLNQGDVLRLDFQLKEESVVM
EAVQVVANSLKNSIATTGAATSVTANDLNKLPVNGRNFTSLIDLSPLSTGSSLSGQLASS
TNYTIDGMSAKGPTSGGSTTSRNGVPYAISMEAIREFKVVTNEYDVTNGRAGGGTISTVT
KSGTNQLTGSAFTYLRSDWLSSKYDIRGNKRSNDFSTYQFGASLGGALVKDRAHFFISWD
HQADSRPLYIADIHNAADEKRYNLTTETRDRFLEIARNKYGVSDHPQFGSFDKKQNTDAV
FARLDWQINATNLLSFTDNFVNDNNNMGLSDNSAINLYEVYGDVHSLNNSALLTLRSVLG
PRSTNELKLQHLYTLEKSMPGSELPADNIPRAIVQRVESEIDGKTATTTIQLGGQRYSPE
NFYNHVLQLVDNYYYNTNKVNYTYGFDLMYTNLNSRYGSEANGRFYFTGLDNFEALKPSR
YVREVYLDPDQNNQRVRQNILNAGIYAQLQTKLFTGFELMAGLRLDNATYFNKGNFSQLV
YDELGLRTDNGLSTFQIQPRVQITWDFNDKHTDILRIGGGIFASDINNYAMINNMVFDGT
KVMSVDIKNTEEEPDIVPTPDFIGYRKDPSTAPGIDLLNNPKYADKAVPTINMNSKDAKV
PVVYKANISYTHFFSDRLKMSVSGYMTLGRNNYMYIDRNMVDDPYFRLSAEGNRGIYVPA
STIGKDGTLDWMEGRKSTKVGRVLELVSEGKVNQFAFTVDGTWRYYKDGELSFSYTWNDT
KDNTSYNGNVANSATLSQMVVDDPRDLSKMTYSNNQFRHKLVVYGSAPTFWGITVGARFS
GIGGTRYSMIVNGNVNGDFVDSNDLAYVYDPNSSATPDYIREGINSILNNPDAEKSVKDY
IRKSFGKVAERNGGVNGFYGTLDLRLAKKFKTYKKQNLEVSVDIFNVANMLNKDWGAGHN
LGTQKIYSIKGFDKDAKQYTYNVNANTGVSSLNGTPFQVQIGLRYGF