Protein Info for HMPREF1058_RS11550 in Phocaeicola vulgatus CL09T03C04

Annotation: rRNA maturation RNase YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 PF02130: YbeY" amino acids 18 to 134 (117 residues), 93.4 bits, see alignment E=5.3e-31 TIGR00043: rRNA maturation RNase YbeY" amino acids 36 to 135 (100 residues), 102.4 bits, see alignment E=7.4e-34

Best Hits

Swiss-Prot: 99% identical to YBEY_BACV8: Endoribonuclease YbeY (ybeY) from Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_1217)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZWV1 at UniProt or InterPro

Protein Sequence (138 amino acids)

>HMPREF1058_RS11550 rRNA maturation RNase YbeY (Phocaeicola vulgatus CL09T03C04)
MISYQTEGVKMPDIKKKETTGWIKEVAACYGKRVGEIAYIFCSDDKILEVNRQYLQHDYY
TDIITFDYCEGDRISGDLFISLDTVRSNAEQFEQPYDRELHRVIIHGILHLCGINDKDPG
EREIMEAAENKALALISL