Protein Info for HMPREF1058_RS11410 in Phocaeicola vulgatus CL09T03C04

Annotation: PD40 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07676: PD40" amino acids 56 to 91 (36 residues), 37.3 bits, see alignment (E = 4.1e-13) amino acids 210 to 244 (35 residues), 31.7 bits, see alignment (E = 2.3e-11) amino acids 312 to 334 (23 residues), 12.4 bits, see alignment (E = 2.5e-05) amino acids 348 to 383 (36 residues), 36.3 bits, see alignment (E = 8.1e-13) amino acids 499 to 525 (27 residues), 11.4 bits, see alignment (E = 5.1e-05) PF14684: Tricorn_C1" amino acids 710 to 776 (67 residues), 89.1 bits, see alignment 3.2e-29 PF03572: Peptidase_S41" amino acids 900 to 1055 (156 residues), 78.6 bits, see alignment E=8.7e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1192)

Predicted SEED Role

"putative Tricorn-like protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZVP0 at UniProt or InterPro

Protein Sequence (1084 amino acids)

>HMPREF1058_RS11410 PD40 domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MKKLLTCLALSFVAASSYAATPLWLRDVQISPDGTEIAFCYKGDIYKVPANGGTATQLTT
QASYECSPIWSPDSKQIAFASDRNGNFDLFVMSADGGAARRLTTHSASEIPSTFTTDGNY
ILFSASIQDPANSALFPTSAMTELYKVPVTGGRTEQVLGTPAEMVCFDKSGKTFLYQDRK
GFEDEWRKHHTSSITRDVWLYDSENGKHTNLTAHAGEDRNPVFAPDGQTVYFLSERDGGT
FNVYSFPISSPQSLKTVTHFKTHPVRFLSMGSNGTLCYTYDGEIYTQKQGDKPQKVKIDI
IRDDQNTIADLNFSNGATSATVSPDGKQVAFIVRGEVFVTSTDYNTTKQITHTPAREAGL
TFSPDNRTLAYASERNGNWELYMAKIARKEEANFPNATAIEEEVLLPSDKTERTYPQFSP
DGKELAFIEDRNRLMVLNLETKKVRQVTDGSTWFSTGGGFDYSWSPDGKWFTLEFIGNRH
DPYSDIGMVSAQGGKIINLTNSGYTSGSPRWVLDGNAILFITERYGMRAHASWGSLNDVM
LVFMNQDAYDKFRLSKEDYELQKELEKEQKNTTEAKKNDKKKGDNKEKSEEKKEEKVKDI
VVELNNIEDRIVRLTPNSSDLGSAIITKDGETLYYLSAFEGGYDLWKMNLRKKDTKLLHK
MDAGWANMEMDKDGKNLFLLGSNTMQKMGTDSESLKPISYQAHVKMDLAAERDYMFNHVY
KQEQKRFYNLNMHGIDWDAMTKAYRKFLPHIDNNYDFAELLSEYLGELNVSHTGGRFRPQ
LKGDATATLGLLYDWNHNGKGLLISEVVEKGPFDHARSKVKAGNIIEKIDGQEITPESDY
SVLLNGKARKKTLVTLYNPQTKERWEEVVVPVSNGVMSDLLYARWVKQRAADVDKWSNGR
LGYVHIESMGDDSFRSVYSDILGKYNNREGIVIDTRFNGGGRLHEDIEILFSGKKYFTQV
VRGREACDMPSRRWNKPSIMVQCEANYSNAHGTPWVYSHQKIGKLVGMPVPGTMTSVSWE
TLQDPTLVFGIPVIGYRLPDGSYLENSQLEPDIKVANSPETVVKGEDTQLKAAVDELLKE
IDGK