Protein Info for HMPREF1058_RS10790 in Phocaeicola vulgatus CL09T03C04

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1013 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 26 to 1013 (988 residues), 658.4 bits, see alignment E=2.5e-201 PF13715: CarbopepD_reg_2" amino acids 27 to 108 (82 residues), 68.5 bits, see alignment E=4e-23 PF07715: Plug" amino acids 119 to 243 (125 residues), 54.3 bits, see alignment E=1.8e-18 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 219 to 249 (31 residues), 50.2 bits, see alignment (E = 1.7e-17)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_1054)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UCD9 at UniProt or InterPro

Protein Sequence (1013 amino acids)

>HMPREF1058_RS10790 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola vulgatus CL09T03C04)
MKRIFTFFLTFLLGVFVTALYAQTHTVSGTVIDKDANEPLIGANVLIKGTTIGTVTDLDG
KYTLQAGDKDILVFSYLSMKTIEEPVNGRTVINVKMASDTETLGEVVVTAMGIKRQSETL
TYSAQTVGGKDVNDIKSVNMINSLQGKSAGMMITPNSTGAGGSSKILFRGNKSISGNNQP
LVVVDGVPVMMNITNSQVDSNYGGQRDGGDAMSTINPDDIAQITLLKGASAAALYGAVAA
NGAIMITTKSAQSGKVSVNVSSNTTMESPMVLPEFQTTYGMSDNGTFSWGEKLSSKAPNY
AKKFFRTGFTTNNSISLSGGNENIQSYFSYANVYSQGITPQNDYRSHNLNSKVGFNILKD
IHIDFTAKFTNQHITNQAAAGYLWNPLTGVYLFPRGEDWNGYKENFEVYDPARGCYVQNW
TNTQQQQFGNPYWMLNRQTPITDRNRYEFGGSIKWNITPDLNIQGRMRYERGEEHWVHNA
YASSVGNLYPMGRMKDNRYFSDQLYGDVLVSYNHTFNDFSLSATAGSSFTKTKTSHVDLW
GEGSQFSQPGSGNIFYPNIFTPNNYYGNMSTVGKDDNWMTQKRLNSVFATAQLGYREGIF
LDISARNDWSSALAFTESCSFFYPSFGGSVLLNKFVDMGKNIDLFKFRASYSIVGNDVPV
FMSNLLYSLGSQGAITPPDKAPFRTLKPEKTHSLEIGFDGTFLQNRLNINLTYYKTNTKN
QFFSVAAPYESGLRNRYVNAGNVENKGFEFNIGWYEQFTDNFSWSTNLNFSYNDNKIKEL
VDDLPNGLTLTDFGGAKVILKEGGHYGDLYVRHLMRDENGKPLQNEKGEPIVSGDSMDEL
EYAGNMNAKVNMGWTNTFRYKDFSLSFLIDAKFGGKVISMTEAALDGWGVSKRSGEARDA
GGITVDGVKFDADKYYRTTGNNNFNSPYAVENYVYDATNIRLREVTFGYTFRNLLGAGKN
LTAAIIGRNLFFFHKDAPMDPDVSAGTGNGIQGVDMFALPTSRSFGLNLKLNF