Protein Info for HMPREF1058_RS10730 in Phocaeicola vulgatus CL09T03C04

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1357 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 784 to 802 (19 residues), see Phobius details PF07494: Reg_prop" amino acids 37 to 60 (24 residues), 21.3 bits, see alignment (E = 8.2e-08) amino acids 451 to 472 (22 residues), 17.9 bits, see alignment (E = 1.1e-06) amino acids 585 to 607 (23 residues), 19.3 bits, see alignment (E = 3.6e-07) PF07495: Y_Y_Y" amino acids 717 to 776 (60 residues), 38.9 bits, see alignment (E = 2.6e-13) PF00512: HisKA" amino acids 839 to 904 (66 residues), 39.5 bits, see alignment 1.8e-13 PF02518: HATPase_c" amino acids 951 to 1063 (113 residues), 70.8 bits, see alignment E=5.4e-23 PF00072: Response_reg" amino acids 1108 to 1218 (111 residues), 83.1 bits, see alignment E=6.3e-27 PF12833: HTH_18" amino acids 1277 to 1355 (79 residues), 66.6 bits, see alignment 8.4e-22

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9UBJ9 at UniProt or InterPro

Protein Sequence (1357 amino acids)

>HMPREF1058_RS10730 response regulator (Phocaeicola vulgatus CL09T03C04)
MNLKILSLVIIGVCILLPDVCYAFLSKDVHLLNMQNGLADNTVSAVYKDKEGFIWFGTRN
GLSRYDGRRITNFERSRSYPSISNLKEVFDGVLAFVDNGVFSAFDLKKERFLSVVSSSGQ
GIPSRGMLQRNDSLVWVISGSELHLMKRCASKEGELRLRVQEKYTGWNNQDNLLVAITYS
SDKKSICLIDEKGRIILLDATNLNSFRVIDLGRTGSLSVNSVLYDDGRIWISTIAHGVIY
YNERTGKIKQLTYHVAPVSDRLSHTDVFGVIRLNENKYLAVTWNGYTVMTIDKNNQDEIL
TEVYSNTSSLMYRNLETRMIAAYYDSHGILWIGTDGGGVIWSDLRMQFYNCFYQDRHNEI
CSIVADDDHYLWLATYHKGIMRSRTAFGTSEKIDFFQVGDQDVKKQQTVLCSLKDEKGNL
WFGNSDGSLTCYYKKERSFKILRLITEDGDLNKSSVWALFLDSKGRFWIGTHKGLWLFDR
ETNRGKKIHFKVSGLQNLSPLYIRAMAETDDHTLWLGTANYGICKVINEKELQTGYEKKY
GMAENSVRSLLASSDGNLYVGYMAGLAVFSPGQDAITHVYTTRDGLCSNFIGCMTEDADG
QIWLGSNSGISRYSRHQHLFYNYYIAGSNRSVLHWEDVLFWGNNKNLTYFNPDDIKAFTT
SESVVITGLEVNNKPVEIGREVNGQTILSQSIFYTPFVRLNHANRDFALTFNNLSYSESQ
QKYSYRLRPYQPDWLVANGGEKVSYANLPAGEYVFEVKNIYPDERDSKITSLRVEILPHW
SETFFFRFCMMVLGGIIVYMVMQRIKLRQKRLEHELRLEHEIFAATVERDKEKQIRMERE
NFFTNAAHELRTPLTLILSPLQELLGTVRPSDTVYTKLAAMYRNGTSLQTLVDHLLYVQK
IEAGMIKLRISKVDIVVLAKQITDPFHELAETEGINFTVESLNEPLLLWIDVEKISSAIR
NLLSNAFKYTSPNGKVIFKMNRIEIDGYSFCSIIISDTGKGIPEELRGRIFESFITGENT
PLFSNKVGIGLRIVKNTMDLHHGTVNLDSTLGKGSTFTLLIPEGNAHFAEDRYEIVGAPE
MEEYALPLPVMQAEGQEDKPSNKKTSLLVIEDNEEIRHYVCSLFCKDYAVYEAANGEEGV
DVAMSKIPDLIISDIMMPVKDGFTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGV
DDYMMKPFNPEVLKAKVRNLILQRERLKRIYTKTLMLKQQESEPETDGNNAPDDFIQQII
HVIEANLANENFNVKMLAEQLNMSQPTLYRKIKQRSELAAIDMIRSVRMSKAASLIMENR
YSIQEIAEMVGYSDTRTLRKHFTEQFGVSPSKYMEKD