Protein Info for HMPREF1058_RS10385 in Phocaeicola vulgatus CL09T03C04

Annotation: tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1612 transmembrane" amino acids 495 to 511 (17 residues), see Phobius details amino acids 1160 to 1181 (22 residues), see Phobius details amino acids 1192 to 1212 (21 residues), see Phobius details PF20155: TMP_3" amino acids 69 to 255 (187 residues), 89.7 bits, see alignment E=1.1e-29 TIGR02675: tape measure domain" amino acids 158 to 208 (51 residues), 29.4 bits, see alignment (E = 3.9e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U842 at UniProt or InterPro

Protein Sequence (1612 amino acids)

>HMPREF1058_RS10385 tape measure protein (Phocaeicola vulgatus CL09T03C04)
MNNNEGTTWWALGLDNAKFESDVAKSNSLFRSIGNTAEKEGSRIDNIFRKITVAATGFFT
AQQALGYAQKIAQVRGEYQQLEVAFNTMLGSKAKADALMTQLVNTAAKTPFDLVGVSSSA
KQLLAYGIAADKVNDTLVRLGNIAAGLSIPLQDIAWLYGTTMTQGRLYAEDLNQFTGRGI
PMIRELAKELGVAENEVKALVSEGKVGFPEVQKVIENLTNSGGMFYNLMEEQSKTITGKI
SNMSDAISVMLNEVGKANEGTINSILETGISAIENYEAIGETIQELIVTYGLYKAAVISV
AATKNAVTTIKATGEAEELSKLLTVEQQAAISKQNLTKGTLEYATAVKAEMAANIEAQTA
ALAKARTEVSAASQAVAAKKAEYLAAKELEKQRLAELMSIGATGSAKQVEAAERKLVAAE
TARETAALQYQAATRDFSTKKVAVETAAKTLNTTQTAANTAAQAANVTTTNLLATAKLRL
TAVATRLKAVMLANPYTLAAAAIAALGYGIYKLITYQTDAEKAQEKLNNAISESEKVIGA
ERLQIDAMFARLKAAKEGTDEYRSAKEAIMSKYGEYLKGLGDEKNALDDLAKAYRIITQE
AEKSARARAMDKAVNEASNDYMDKEVEAKETVEELLKDKFKGKKDKDGIDLAETYYWKIK
PVLEGKGEITKEIQDIIKQFDETKYLPGDPMTGIGAQTYIANDLQDEITKVFKARGIYNN
IIKEAQKRFGENPNQNQKAGNQEEVFYTKGKSISEIEAAITKGQEKLEAFKKALKENNGL
MSDGKVVTDAVVKGQESYIAKLKATVLERENELQIISQVESRISKLKQEQKETVKGSAEY
NDYQRRIDSLSKKLPDRKTSSSQKDYSDEIKRNAQEQIRIKKDMEFAVRQAEINTYKEGL
SKTLEQNQLNYEQEMEQIKRQKEDKLTKIQEWEKTIWESQGKKGTFKPTTTQLSEQDEQQ
FKALENAAGKKLSTGNQTAIEEMLKQYQTYAEKRKEIEENFQQDINEMRAVNEKDKKAGR
QVTFSEENIAQAESDKQDALGALDQEIATREVTFNVWVEQISSMGLRQLKEALQTAQDTL
KKEGGKLDDKEKATLRAQIKTLEKKVEVAEAKDASISSAEKNKKKWSDTLKVMNEVDDTV
NNIISDFDGMDDATKAALSAATNIAGGIISMITGIQALAVTGAEAIKGVERASVILSIVG
TAVSLITSLFGLSSKAEKEHQEALKEVAENKLEMQRQYNLLLMEQNLLLEEATSIFGTDQ
IEKAINAIEVYRDAIAEYKEVLKGDKPTYQFQFNPKGNWGLDEYNAKLNAYNQGIGALND
ITIKTGSYTTGAWFWKKQHDIYTSVLQVYPDLIDGEKNLNKERAQAILDTQTMSDENRNL
LQNLIDLQEQAEEAQQALRDYLEGTFGSLGDSIMDSITEAIENDGVDAWEKFGEKGSSVL
EDLGKQIAYSLFFSDKFKRLQADLEKIYGSGKTEEEIAKEARDLVSSFYQGIGTDMNNAQ
QWMEHWKEEANKQGFHLWETENREVSSNNGIAASQDSVNELNGRTTAIQGHTYSINEGIK
SLVSHCAKFLEVLTGIRENTSYCKNLESINSNIKEMKESIGNMNDKGVIMRK