Protein Info for HMPREF1058_RS10050 in Phocaeicola vulgatus CL09T03C04

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1373 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 771 to 797 (27 residues), see Phobius details PF07494: Reg_prop" amino acids 36 to 58 (23 residues), 18.1 bits, see alignment (E = 9e-07) amino acids 492 to 509 (18 residues), 19.2 bits, see alignment (E = 3.8e-07) amino acids 578 to 599 (22 residues), 16.1 bits, see alignment (E = 4.1e-06) PF07495: Y_Y_Y" amino acids 712 to 768 (57 residues), 28.4 bits, see alignment (E = 5.1e-10) PF02518: HATPase_c" amino acids 948 to 1059 (112 residues), 46.6 bits, see alignment E=1.7e-15 PF00072: Response_reg" amino acids 1115 to 1224 (110 residues), 86.6 bits, see alignment E=5.2e-28 PF12833: HTH_18" amino acids 1287 to 1364 (78 residues), 66.1 bits, see alignment 1.1e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0973)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U915 at UniProt or InterPro

Protein Sequence (1373 amino acids)

>HMPREF1058_RS10050 response regulator (Phocaeicola vulgatus CL09T03C04)
MKSLIITLLCSFCLSTTNAQSYFRQCGIQLLTKQNGLSNNTLTGIYQDKAGFLWLGTDVG
LSRYDGIHFHNYNLIDKEPRALTHLYETSNNLLWSHIANLNQIACFDKMRGIYMPLISPT
PEVLQDIQDICVLQDKLYALTSNAIVELNMEKNADEIRLTAQLLIDIKTKVLGLYNNEDI
LCALTAENQILLYNVSDKSSEHINGTDLGIVKADNIEKIHIYNDNVWICDQTEGIICYNT
NTKTSRTLNDNSQSSFIQKDIRDIIQIDKTTFIIATWSSLSAIRFETDNYLQSPFHIVDL
TQHDSYYAPILKNRITDIHFDKSNNVLWVGTFGRGLLKLNLKGNDINRIPLNDEIRYVNS
IAQDADGYIWLVTEKDGIYKSTENKISPNLHFSLWEKSHKNNHYCLHKDRNGGLWFGDDK
GNILWVNPTTGETVIHQLNPETADSAVTASILKLYLNSQNHLWIATEKGIMVYNHQTHEC
IAAQPYTKEFKKITAICEDGDGTMWLGTEKGIHRASRKGKQIKFTGGYEKARNLTPGKVL
ALYLNNYNQLLISYTDKIIQIDGKEKTISSIMILQKDLPNGHISCMIDDKNGNTWLGSNA
GFITLNNKNNASYTYALPESYYDVCRLNDGKLLWANSTGLLYFEPRTLKESSSNCQFHIS
DIDINYNKVEIGEKINGQVILDKPTYLIEHLSLDYNNNNLILYLSDLKYGTSPNTVKYRL
LPTEEKWNTNYDDHIKLSNIPPGKYVLEIRSSYPLEENKQITRLSINVNRYWAATGWAIA
AYILAIIIISLLTWMYFNRKLQKRQVYKAKEVKLKEKLEEETEIRKEEEKNHQLRDQIRY
MLAQELRTPLSLITAPLKEMITNTAFPESFLQKAKMAYRNSISLQDICNQLLNIHQQESY
SPKLNVAPYPASVIADTVVRASHELLNVSPINLHYDKDNKINTEIWIDRKKIIFILSNIL
SNAYRHISYSGSIHFTVNTSTINGKDFCLFTIEDDGKEMIEESSVIFLGSDNYNPPSNRL
HPELGIEIMKTTILAHHGDIQITQEKNKGTRVVLYIPLGKQHLKNDENVCFIEPETIMED
SDKAMITAEDKRQQEIANSITAKPIDNPETKYKLLVVEDHADIRLYLRVLFSATYNIIMA
ENGEEGVRMARKEIPDLVITDVMMPVMNGFECCRILKEDLKTCHIPIILLTALTDDENIV
KGIELGADDYILKPFNPEILRTKVKRLIKSRTELKRIYTKLLMPSITVNGSQEENTETII
IEDPFITQILNIVNENLQNPEFNVKKLAEMLNMSQPTLYRKVKQLTNFTIIELVRGVRLK
RSAELLRSRKYNVQEVAEMVGYNDIPTFRKHFVDFYGTTPSTFNSKEDTEDKK