Protein Info for HMPREF1058_RS09550 in Phocaeicola vulgatus CL09T03C04

Annotation: PepSY domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 160 to 186 (27 residues), see Phobius details amino acids 207 to 233 (27 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 28 to 389 (362 residues), 231.1 bits, see alignment E=1.3e-72

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_0849)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U9A8 at UniProt or InterPro

Protein Sequence (398 amino acids)

>HMPREF1058_RS09550 PepSY domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MGVCGQYVLMQTLFMNRIEDFMKKIFRQIHLWLSVPFGLIISLICFSGAMLVFENEVMEL
ARHELYYVKKVEAVSLPVDRLLEEVEFMLPDSVSVTGISVFSDPERAWQVNLSKPRRASV
YVDQYTGEIKGKYERPAFFVTMFRLHRWLLDSMKADGGVFWGKMIVGVSTLLFVVVLISG
IVIWWPRTRKALKNSLRISVGRGFRRFWYDLHVAGGMYALFFLLAMALTGLTWSFGWYRT
GFYKVFGVEVQQGGAHGGVTQRGGKGGDQSGKNVSHSSSYVCWQQVYDQLALNNPGYKQI
TLSDGAANVSFNTFGNQRASDRYKFNPHTGKINEVVLYKDAEKVGKIRGWIYSVHVGSWG
GMLTRLLTFIAALIGATLPLTGYYLWIKRIWRKKVRVS