Protein Info for HMPREF1058_RS09510 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 22 to 1012 (991 residues), 919 bits, see alignment E=4.8e-280 PF13620: CarboxypepD_reg" amino acids 23 to 94 (72 residues), 37.1 bits, see alignment 5.2e-13 PF13715: CarbopepD_reg_2" amino acids 24 to 106 (83 residues), 68.6 bits, see alignment E=5.7e-23 PF07715: Plug" amino acids 114 to 219 (106 residues), 73.8 bits, see alignment E=2.3e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 195 to 225 (31 residues), 66.5 bits, see alignment (E = 1.4e-22)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0841)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U8H9 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>HMPREF1058_RS09510 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MKKQILLLCLALTSLCSYAQTITVKGVVTSASDKEPMIGATVQVKGTGTGTITSIDGDYS
LNDVAKDAVLVFSSIGYETQEIKVNGQTVINVVLKDASELLDEVVVIGYGAVKKSDLTSS
ISTVKGKEITETVTGNAMDALQGKINGVQVTSGGGPGAQPKVLIRGVTTVNGTDPLYVVD
GMPVGTNINFLNSNDIESMEVLKDASAAAIYGTRASNGVILITTKKGMAGKTNISFNASA
GFQTLSKPKMANAAEYKEVFNTRYTNDGGTSIWNDTGATTNPGGTDWWDEVINKTALVQN
YSLNISGGSDKLVYNLSMGYYRNNSQYDYGYWDKINARLNTEYTFNKYVKMGFDIAPRVE
SWDDTPDLFSAAMSMDPTTPIFKPEDQWVDNEFNNYQRSYNNQEWNPAGSLARQNSHSRE
MGTIVNTYLQINPIQKLTLRTQFGANAHFRRTDKFTPEFYIDALEQSTLSNVSREMQEWL
DWNWTNTATYITTFAEKHNINVMGGFTAERFAEFQSKASRDDVPNNMDQMQEVNAGTQNQ
KSEGKTAYSTLVSYLGRVMYNYDNRYYLTASIRADGSSRFPKGNKYAIFPSVSASWRIIS
ESFMQDQKIFSNLKLRGGWGRVGNQNIDNDATLTLLGQSDYVFGTAPGRVSGTMVSGVGN
NLLKWETVEDWNVGVDMSFLDSRLDMTFEYFQKKSSDMLYQKQNIFAIGYPDWNSTVWMN
IGSMKASGWELSLNWHDKVADFRYNVGLNLSAVKNKAVKFSGDGPIQTGGFNSDQIIRNE
DGGLISRFYGYVADGIFQNWDEVYAHTNENGKLVQSNAQPGDIRFKDLNHDGVLDENDKT
WIGNPYPDLMVGLNLGFSYKNIDFTANFYGTFGNDIFNKTKGLYSGVSGQNVWAGTLQKA
WHGEGTSNDIPRLSYNDLNQNYTRVSSFFVEDGSYMRCKLLQVGYTLPKKWLNGTELRLS
LSAQNPFTITSYSGMDPERPQIGKDGSVIETGIDGIAYPNPRTFLFGIDLKF