Protein Info for HMPREF1058_RS08815 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1009 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 22 to 1009 (988 residues), 913.7 bits, see alignment E=1.8e-278 PF13620: CarboxypepD_reg" amino acids 23 to 92 (70 residues), 42.7 bits, see alignment 1.2e-14 PF13715: CarbopepD_reg_2" amino acids 24 to 103 (80 residues), 63.8 bits, see alignment E=2.5e-21 PF07715: Plug" amino acids 111 to 215 (105 residues), 75 bits, see alignment E=1.3e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 191 to 221 (31 residues), 66.6 bits, see alignment (E = 1.3e-22) PF00593: TonB_dep_Rec" amino acids 372 to 747 (376 residues), 72.5 bits, see alignment E=1.3e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0585)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZUF2 at UniProt or InterPro

Protein Sequence (1009 amino acids)

>HMPREF1058_RS08815 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MKQIAFTWLLCILSICAYAQQITVTGTVTDAENNPLIGAAVVVVGTTDGVITDFDGKYTI
KAASGQSLKFSYVGYQEQTVKVDGRSVINVKLSEGELLDEVVVIGYGTVKKSHLTGAVAS
VSGKELQANVARSASAALQGRVAGVTVSAANGQPGEGLNINVRGISSLSATSPLYVIDGV
YGDINMVDPADIQSIEVLKDASAAAIYGSRAANGVVLVTTKGGRLETPARVTVDAYTGVQ
MVAKYIDVMDGNQLRDLAKATGYSSAEGLLNWNGGAGTDWQKELYNSAMVSKVSLNVSGG
NKTSTYNLSGSYLNQDGIVNTTGYEAWNIRAKNTFSFFNNHLRMGTTLMMKFYKKKYEDV
SYTSALTAVPMWNVYGEDGTWGVAPEWTRGDNPVGWTEAYDYQRHGIDILLNGYAEVDLF
LKGLKYKFNVGINKYTRRNYAYSSPYYFSSTSQKNEAELSESTDWENDWLIENTINYDNT
FGNHTVSALVGYSAQRNNARGFGAGRKGFPEGFSVIDAGSVSSQNTSGSAWANTMISMFG
RVMYSYADRYMLSASVRRDGSSKFADGNRWGTFPSVSLGWNVMNEDFFENIKETMNELKI
RASYGVLGNLSGIGNYATQSVVYKGMNNMMGTELWEGAITGKEWTSPMNVTWEKTKTLNL
GLDFAFLNNKFSVSADYFIQKTEDMLLSMPQSLSFGLSGNPTVNAGTVENKGFEISLNHR
NNVGDLYYHVGVNATFIKNELTEVNGSRDEWQGFNPHAKGTITYAKTGHSIGYFNLIKTD
GVFQSQQEIDAYVDKNGNKIQPNAQPGDLRFVDYNGDGKIDNNDRQDVGSAFPKVNLGVS
LGAEWKGLDLNMFFDGNFGNKIYNAQYYSTVYNESTGNQYAERMNSWTENNHSDIPRCLF
GTSDPNGTNWGYTDRWLENGSFLRLKTLELGYTLPKVWVSKAGLQNVRVYTAMENLFTIT
DYKGYTPDLGMVDADGAGTSGGSGVMTRGCDDGRYPMARTITFGLQVNF