Protein Info for HMPREF1058_RS07970 in Phocaeicola vulgatus CL09T03C04

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 80 to 103 (24 residues), see Phobius details amino acids 122 to 139 (18 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 173 to 189 (17 residues), see Phobius details PF02417: Chromate_transp" amino acids 5 to 187 (183 residues), 177.8 bits, see alignment E=9.3e-57

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 100% identity to bvu:BVU_0081)

Predicted SEED Role

"Chromate transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9IV67 at UniProt or InterPro

Protein Sequence (190 amino acids)

>HMPREF1058_RS07970 chromate transporter (Phocaeicola vulgatus CL09T03C04)
MIFLYLFYTFCKIGLFGFGGGYAMLSMIQGEVVTRYNWISASEFTDIIAISQMTPGPIGI
NSATYVGYTAVLNAGYNESWAIFGSCIATFAVVFPSFILMVIISRFFLKYQKHPVVEAVF
KGLRPAVVGLLAAAALVLMNAENFGSYQIDLYQFIISIIIFLVTFIGTRKYKINPILMII
LCGVAGFLLY