Protein Info for HMPREF1058_RS07025 in Phocaeicola vulgatus CL09T03C04

Annotation: 50S ribosomal protein L35

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 65 TIGR00001: ribosomal protein bL35" amino acids 2 to 63 (62 residues), 85.4 bits, see alignment E=1.3e-28 PF01632: Ribosomal_L35p" amino acids 2 to 62 (61 residues), 86.6 bits, see alignment E=6e-29

Best Hits

Swiss-Prot: 77% identical to RL35_PARD8: 50S ribosomal protein L35 (rpmI) from Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)

KEGG orthology group: K02916, large subunit ribosomal protein L35 (inferred from 82% identity to bsa:Bacsa_1682)

Predicted SEED Role

"LSU ribosomal protein L35p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U416 at UniProt or InterPro

Protein Sequence (65 amino acids)

>HMPREF1058_RS07025 50S ribosomal protein L35 (Phocaeicola vulgatus CL09T03C04)
MPKIKTNSGSKKRFVLTGTGKIKRKHAFHSHILTKKTKKQKRNLVHSGLVANANLDQVKE
LLCMK