Protein Info for HMPREF1058_RS06785 in Phocaeicola vulgatus CL09T03C04

Annotation: glycosyltransferase family 4 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF13439: Glyco_transf_4" amino acids 17 to 173 (157 residues), 54.7 bits, see alignment E=2.5e-18 PF00534: Glycos_transf_1" amino acids 192 to 347 (156 residues), 94 bits, see alignment E=1.6e-30 PF13692: Glyco_trans_1_4" amino acids 195 to 335 (141 residues), 74.2 bits, see alignment E=2.7e-24 PF13524: Glyco_trans_1_2" amino acids 278 to 365 (88 residues), 41.1 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3981)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZPN9 at UniProt or InterPro

Protein Sequence (372 amino acids)

>HMPREF1058_RS06785 glycosyltransferase family 4 protein (Phocaeicola vulgatus CL09T03C04)
MKIAIEAQRIFRKEKHGMDYVALETIRELQKIDQQNEYFILVSPGDDICLQESANMHIVT
VNWPSYPLWEQIGLPLALKKIKPDLLHCTSNTAPVYGNIPLVLTLHDIIFLEKKQGKNQS
MYQRLGRFYRKIIVPQILTKCKRIITVSHFECNRISHFLHIDKQQLVAVYNGYSQHFIPI
RNAQAITARYIKNHPYLFFLGNTDPKKNTARVLQAYGIYLKKSSQPLPLLIADLKEEIID
EYLNREGLQEIKKMLYHPGYIPNTELPAVYSGASVFIYTSLRESFGIPILEAMACGTPVI
TSTTSAMPEIAGPEGILVNPFEPEEIASALLHLEENAEFYQSQTAYGLERVRRFSWENTA
REILNIYKEILA