Protein Info for HMPREF1058_RS06580 in Phocaeicola vulgatus CL09T03C04

Annotation: phosphate ABC transporter permease subunit PstC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 296 to 320 (25 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details PF12849: PBP_like_2" amino acids 36 to 107 (72 residues), 37 bits, see alignment E=3.3e-13 TIGR02138: phosphate ABC transporter, permease protein PstC" amino acids 150 to 392 (243 residues), 289.6 bits, see alignment E=1.1e-90 PF00528: BPD_transp_1" amino acids 190 to 394 (205 residues), 73.2 bits, see alignment E=2.3e-24

Best Hits

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 100% identity to bvu:BVU_3939)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9U541 at UniProt or InterPro

Protein Sequence (395 amino acids)

>HMPREF1058_RS06580 phosphate ABC transporter permease subunit PstC (Phocaeicola vulgatus CL09T03C04)
MKRVWEKIVEGILTCSGFVTSITILLIVVFLFAEALGLFNKKVIEEGYVLAVNKANPVQE
LSAAQIKDVFDEEITNWKELGGPDAEVKVFRLEDITSYFSEEELGAGYEKAPRCIGEIVA
GNPGIIAFVPSKFIEKDFPGHLLKDESISFDEVFAGKEWFPTATPAPQFGFLPLITGTLW
VSFFAILFALPFGLSVAVYMSEVADHRTRSFLKPVIELLSGIPSVVYGFFGLIVIVPLIQ
KVFNLPVGETGLAGSIVLAIMALPTIITVSEDAMRNCPRAMREASLALGATRWQTIYKVV
IPFSVSGITSGVVLGIGRAIGETMAVLMVTGNAAVIPTTILEPLRTIPATIAAELGEAPA
GGAHYEALFLLGVVLFFITMLINFSVEYISSRTNK