Protein Info for HMPREF1058_RS05960 in Phocaeicola vulgatus CL09T03C04

Annotation: YjbQ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 TIGR00149: secondary thiamine-phosphate synthase enzyme" amino acids 12 to 137 (126 residues), 126.3 bits, see alignment E=3.3e-41 PF01894: UPF0047" amino acids 19 to 134 (116 residues), 127.2 bits, see alignment E=1.9e-41

Best Hits

Swiss-Prot: 54% identical to YJBQ_SALTY: UPF0047 protein YjbQ (yjbQ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3607)

Predicted SEED Role

"FIG004064: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9IRT4 at UniProt or InterPro

Protein Sequence (137 amino acids)

>HMPREF1058_RS05960 YjbQ family protein (Phocaeicola vulgatus CL09T03C04)
MVSQTEFTLRPRTRGFHLITDEVVRNLPPLPQTGLLYLFIKHTSAALSINENADPDVRTD
MESIFNHLIKEREPYYEHTLEGWDDMPAHAKATIIGVSLTIPITEGRLNMGIWQGIYLCE
FRNHGGGRKIVATVMGE