Protein Info for HMPREF1058_RS05600 in Phocaeicola vulgatus CL09T03C04
Annotation: DUF3883 domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I8ZN54 at UniProt or InterPro
Protein Sequence (1534 amino acids)
>HMPREF1058_RS05600 DUF3883 domain-containing protein (Phocaeicola vulgatus CL09T03C04) MNRNFITKESDCLMINKREYLSQLSFNSSRIRQDKKIELDMQQEYSGRELYEMIQNADDE GSPKVELVLTDDNHFHIKNWGNRPFTEGGLLSIMRSFLSTKTKESYQNAAVRPIGNKGLG FRSLLNWSDKIIIHSNGVQCSFSEDIAKREWKMIKDRGLKDGALTQKDINDFERERPNNL PLPILSIPEINCDNITKQDCFDINGTCTTDVEILCKDQSVVSDIDSKLSSLPCSVLLFLR SIERIDIDNKGKKRVIKRNRAEVIDEGLEKITISDNGNNICFAVSKYQSDDRSFEVGVAY PMADFNNEHYMYSYFPTQVRLTVPAIYHGTFELNASRNHLVNSEQNKTVLKKLGEVAVKL SENLVNHNLLKGNNWGPFSILNFACADISTAMLSTLAESIKSNLGSAEILPRINSTFSSI DSTIRLGDKLASWLLGAKPEIYQETSLKNHLLPIDQGIFSSSRYLSDYVLEKINVWLDGI VDDIQVIANKKLLLEDRVDFIDAIVDCGSNSKNMSILIDANGEIIDGDKDNPAYVLSMSG NTILPKCLSIKSVDSKLINLLQEKWNLQIRQVTERLQKVTSVINGDHSAIRKKIELWSAK DMDCEGMCEVMKWEFDNPTKDATAFTSDLHLLNRLGERTNSCSLLLDEPTFSRELFEKID GKWLLLYSLSEWKDILSAKTEEEASHFLYKILGVSQRVPSRHVYFGRNQEYLNDVRNDNN KSQIGNYYCDNFDQYNKTSKEYNYSYVPDAEYLSMFSLSEALGLILKDERVLSDIMDKSI SLFFRSKKSETVRCSFSAYSLKSSAQFLPLQYSVIQSTNFGCGIDYNYLEKELSIDRITQ INPLLVTLGAQTNIGSFSTEQLYELLSQKVDSSGVQKRYKELREAIRNKNEDESVFYKIR EKCLTHVWAREKGRLEWKPVGEVYYWDNDQLPQAILATLPKLEIGNRVGEDSVSKIFGVK LAKNVDISFSNQVNNDGLLKEMKKYLSDRIKYFLAFRIGDDIKNLGLIRQSVSALKGLCN NLYIYTSAQYKFNKELHCMKEGDILTSFENSGMHFHICSSHHNCTNAIFDPVFCENLNEA VCMALKVTSNAMANYFRNIITHDIHYIEYITKKDIAPEVWSLTLKSLGLSEYEQAFWKSY SDSQSIKIDLSQLAEHITDAREFICGIYPHLDLPETYTGIEVLGPYEKYKLLLSMKVDDC SILGDDGLKDFYQEFFMAVQKKCFGKYKNYLYNKTSNMISWNRQDALSYIEDYRDKCLSF NEPFFEGKVNEIKQELIGNDDLEKIMYELVQRKFNFSLDDCDDEVTDIPTAILPEYEKIL DEFHMSEGSLNQIDALIAKFKGLEDLFRLQMKKYDDTDSILRKKGGLDDDTNKVVIEIAR CHSVLRDLKSDMKNTNKGKFQNGYKSDRSKYQAGKNAEIKTFEAMKSSEQYEDVYGCSKI LNKESGDDNLHYDITYRKKGTSKTDMRYLEVKNGTTFLMSCLEYQFALDNRENYDLAIYH DGKVSIIESPFSSKDGKKSLEAQPETYQLTIAWD