Protein Info for HMPREF1058_RS03900 in Phocaeicola vulgatus CL09T03C04

Annotation: DUF2461 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 TIGR02453: TIGR02453 family protein" amino acids 5 to 218 (214 residues), 276.4 bits, see alignment E=9.1e-87 PF09365: DUF2461" amino acids 6 to 212 (207 residues), 265.8 bits, see alignment E=1.5e-83

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_3324)

Predicted SEED Role

"FIG00403581: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9TYF5 at UniProt or InterPro

Protein Sequence (221 amino acids)

>HMPREF1058_RS03900 DUF2461 domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MDVSVIFQFLKDLAANNNREWFQGHKDEYLKAQKEFEELLTAIIARISLFDESIVGIQAK
DCTYRIYRDTRFSSDKTPYKIHLGGYINARGKKSEHCGYYVHIEPDNCMLAGGSWCLEPK
VLKAVRQSVYDNIDEYREIVEDPAFKQYFPVIGENHLKTAPKGFPKDFEYIDYLKCKDYT
CAYMVPDAFFLAPDLLDKVEDVFKQLKRFADFTNFTIDDFE