Protein Info for HMPREF1058_RS02915 in Phocaeicola vulgatus CL09T03C04

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 934 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13715: CarbopepD_reg_2" amino acids 50 to 133 (84 residues), 38 bits, see alignment E=2e-13 PF14905: OMP_b-brl_3" amino acids 453 to 798 (346 residues), 90.6 bits, see alignment E=1.8e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0411)

Predicted SEED Role

"FIG00415194: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9ILX4 at UniProt or InterPro

Protein Sequence (934 amino acids)

>HMPREF1058_RS02915 TonB-dependent receptor (Phocaeicola vulgatus CL09T03C04)
MTKLFSLFIILSFVLPVSGQEKLDSDKARKEKAYHLTGSVREQGERPYPDPLPDVNIQLY
SLPDTSFIEGTVSDKKGVFRLYPMNPGNYLIRASFLGYETIEKKVNIPAYRKEVYGGTLM
MKPSSIVLDETVIKAELQKMKMSGDTLVYNTGAFKTSEGAVLQDLVRQLPGLELDEKSGK
MNFHGKEITQILLNGKEFFADSKVALNNMPVDALKEVKVYEQQSDKEQMTGVSDGKKKTV
MDVKTKKDLTDGLMGDVSALKGSGDMYGAKMSLNKFVGKWRMSLYGDLGKLPRYGNFISD
MADNPAQMKDIGFSLGTEIKKLNLNVSASYNNNKSADESRSQSEEYLPNGSQYAYNNGLS
TGRNSSFWENIYLTGSLSDRTEINFRHNINHSRLNSVSENISATFSTNPLDYVSEPWRDD
AMIPPEFRINKNTGNSQNKTNNLMIGNNLLLTHNLNDIGRKLSIELRNDYSNQASGNYQQ
SSITYYQLKNDLGADSVLYRNQYRESPARNLLLAGEVSYTEPIGKQMLQVYYRHEYQRQS
NNAVTYNLDEDALWGSLPSGYEAGRVDSLSDYTRNDLHSNEFGLRTTLNWRKVRLNIRFG
LSPQKSTTKSNRGKVKIDTTITVLNIVPELHFDYDLGNNHNMSVYYSGYTRQPSIYDLLS
VPDYTNPLNITMGNPGLKPAFGQSISVNYRGGNMEKQEMLYCGLRYNNTINDISRKRTYD
EKSGVYTSRPENINGNWGIGGNIYYTNKLFKKIFARLATNANYNRRVSYVQIMGEANEND
RNTSQMLSLMQDVEFAYKLEEHEFKINGAITYQQADNSYTNNSDYRTYDFYYGAECRLKL
PLNLNLYTVVRSMNRRGYKDEASNTTQWLWNGELTYSFLKGKRGLLKFQVVDILQQRDFV
NRWMNDTGQGETWTWGLGRYAMATFTYRFNDLSR