Protein Info for HMPREF1058_RS02275 in Phocaeicola vulgatus CL09T03C04

Annotation: outer membrane beta-barrel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 769 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 24 to 88 (65 residues), 37.2 bits, see alignment E=6.5e-13 PF13715: CarbopepD_reg_2" amino acids 25 to 113 (89 residues), 42.9 bits, see alignment E=8.3e-15 PF07715: Plug" amino acids 138 to 205 (68 residues), 24.5 bits, see alignment E=6.8e-09 PF14905: OMP_b-brl_3" amino acids 372 to 747 (376 residues), 186.3 bits, see alignment E=2.2e-58

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_0280)

Predicted SEED Role

"FIG00403771: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I9IKX9 at UniProt or InterPro

Protein Sequence (769 amino acids)

>HMPREF1058_RS02275 outer membrane beta-barrel protein (Phocaeicola vulgatus CL09T03C04)
MRANILFCLYFFMGLAVQLQAQVTVTGKVIDEQQQPVPYANIVLLSLPDSAFVAGSISNE
EGAFSLNVKETKDVLRISSIGYATVYRPLDNRSTDLGIICLASDTQILAEVVVKADMPVT
RMRGDALVTNIQNSVLSKAGSASDVLGKVPGVIKERNSYEVLGKGTPLIYINGRQVRDDS
ELDQLNSEDIKSVEVVTNPGARYDATVTAVIRIQTIRRAGDGFGFDLRSSYYQSRNVDLI
EQLNVNYRHNGLDIFGIFRYLKNEYIMKNDIVHTLESDSLWKYQNLLDGTVVDKSLRGEI
GANYSLNDKHSLGFRYTLTSRPNTKSDVFTSNDITANNQFYDHLENQEYSSTSGKPTHQL
NVYYNGTVGDLNIDFNTDYYTNTSTGKGLYHEVSQEQESRDVHTLSYIRNKLLASKLVLS
YPLFGGNLSLGGEYTDTRRNDEYRNPEKYVESTISRVEEDGLSGFAEYSRQFPIGNLSLG
VRYEHVTFDYYKDGVHMDEQSRMYGNWFPNLSFSRKLGSVRTQLSYTAKTQRPTYSQLSN
NVTYVDRFTMQRGNPLLEPCTIHDISLVGTWRFLQLLVSYQQWRKEIIYWGDPIDNGNSM
MMTYLNYHNRPTLNVSFSISPAIGFWHPNLNIGVKKQWMTIDGIEFNKPRPTIRFNNTFE
LSGDFLVSLDGLFMGKGNYQNLYQFKNYGTVDISVRKSFLRDALSLELRGNDLFHGSRNY
WQTYFGSIIWEQTNQWDTREFSITLRYKFNTTKSKYKGTGAANDELRRL