Protein Info for HMPREF1058_RS01870 in Phocaeicola vulgatus CL09T03C04

Annotation: tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1544 transmembrane" amino acids 463 to 489 (27 residues), see Phobius details PF20155: TMP_3" amino acids 205 to 389 (185 residues), 91.2 bits, see alignment E=3.7e-30 TIGR02675: tape measure domain" amino acids 283 to 344 (62 residues), 35.3 bits, see alignment (E = 5.6e-13)

Best Hits

Predicted SEED Role

"FIG00897168: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZFZ8 at UniProt or InterPro

Protein Sequence (1544 amino acids)

>HMPREF1058_RS01870 tape measure protein (Phocaeicola vulgatus CL09T03C04)
MAKLYFKVGSDWEEVVRLRNEIAKLKQELMSMDGTQTPAAFKALNAQLAASNQRLDELVT
NAAKAGAEMETGFKRKIFDASQAVNGFTEKILAQKAVVKDIEADVKRLGDAYRIALKRNP
LSANSKLEEYNAARKALDEEKAALFGLTQQQAEARLSVKKLRDEYALYKDDAKEVVETNN
GIAISWKKALAVIGGTGVLKALGAEMIRVRGEFQAADTAIETLLGNKEKANALMSQVREF
AKISPLEFSDVTAATQMMLGFNIEAEKVPRYLQAISDISMGESSKFNSLTLAFSQMSAAG
KLMGQDLNQMINAGFNPLQIISEKTGKSIATLKDEMSKGAVSAEMVQQAFIDATSAGGKF
YNMSENASKTINGQLSMMQDALDSVFNELGTKSESVIMDGIQMTTSLIQNYETVGRILAG
LVVTYGTYRTAVMLVTAAESKHTLVEIGLTNARLLARKAQLALNAAMLTNPYVLLATAVV
GLGATMWALSDSTTSAERALDSYNKKIEKLNTDEEDRKRTLEGLVSTINSEVEAETTKLK
ALKDIEKLYPVLFKKYVDEKGHIHDLTGFWKAYNEEVSKSRTQSKQAIVESLEQQIKSAE
WAYNLAKKENNRSEMKVQAQRIEDLKNELANARKDVLSEINAQLEVENRQETKETTYQED
LANAKAEWEKAKKGYEALIKDQTATSKQVKEAKDKMEASEKTYKELGGVTGSELTRQENL
AKKQKKEQKKTAEELLSLRRQNQQDEINLMREGTEKKLKQIDLDYQKQIDAIRKQEEEWS
KAGNGKLTDKQAQKISEAYTNAESMRDKDISDVTEGQLKAEQQALNDYLKEYGTFQQQKL
AIAQEYAEKIRKAQEENGVNSAQVKLLEKQRDVAIQNKETEAIKANIDWVTVFGEFGSMF
SDMIKPALDEAKKYVRTDKFKNSDQASQKSLIDAISQMEKSLGGTSGVNFKKLGEDVKAY
QIAEQNRISAIGIETAALERLKKSQDDYTKAQKGGTESEKQAAANALETARQNADIASAN
VKTQTDIANQAQRNVTDTATRLKASMENLLGGLQQISSGGLYNAYSGIIKTVNGFKDVIG
KTSESLKEVPIVGWILSIIDVLKDGLSDLVGGLLDAVLNAVSGIIGDVLSGDLFVTIGKS
LRNGIGNILNAISFGGFNSLFGIGGNAKEVQETIDRLTDRNETLQTAIEDLTDEMKASKG
MKSVESYREAVKYQEEVNKNYLQIAKEQAGYHKSHGSWQHYLKWTDEMLEHARKATGMQD
FSGTDSLWNLTPEQMKALRSDVWLWDIMESSGKGGYGERVTDKLDDYIEQAGKLEELTDS
LYEGLIGMSFDSMYDSFISSLMDMEKSAEDFADDISKYFMQAMLSNAIGEQFSDKLRTWY
DKFGEAMKDDGTLDNNERKELMDEYMGYVDEAMKLRDELAAATGYDKISQESTSQSASSK
GFQAMSQDTGEELNGRFTALQITGEEIKNQNIIQSQSLNLLTVKADALLSINTETRNIAD
DTRDLIAQSYLELVQISENTGAIVKPIQQMQRDIAEVKKNTAKL