Gene info for HMPREF1058_RS0119820 in Phocaeicola vulgatus CL09T03C04

Annotation: hypothetical protein
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold NZ_JH724285, - strand, nucleotides 51,446 to 51,675
See nucleotide sequence around HMPREF1058_RS0119820 or for all of scaffold NZ_JH724285

Nearby Genes

500 ntHMPREF1058_RS05930 and HMPREF1058_RS05925 are separated by 201 nucleotidesHMPREF1058_RS05925 and HMPREF1058_RS05920 are separated by 21 nucleotidesHMPREF1058_RS05920 and HMPREF1058_RS05915 overlap by 10 nucleotidesHMPREF1058_RS05915 and HMPREF1058_RS05910 are separated by 186 nucleotidesHMPREF1058_RS05910 and HMPREF1058_RS0119820 are separated by 140 nucleotidesHMPREF1058_RS0119820 and HMPREF1058_RS05905 are separated by 264 nucleotidesHMPREF1058_RS05905 and HMPREF1058_RS05900 overlap by 4 nucleotidesHMPREF1058_RS05900 and HMPREF1058_RS05895 are separated by 57 nucleotidesHMPREF1058_RS05895 and HMPREF1058_RS05890 are separated by 651 nucleotidesHMPREF1058_RS05890 and HMPREF1058_RS05885 overlap by 11 nucleotides HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120 _RS05930 HMPREF1058_RS05925: HMPREF1058_RS05925 - DUF5024 domain-containing protein, at 48,322 to 48,936 _RS05925 HMPREF1058_RS05920: HMPREF1058_RS05920 - hypothetical protein, at 48,958 to 49,524 _RS05920 HMPREF1058_RS05915: HMPREF1058_RS05915 - sigma-70 family RNA polymerase sigma factor, at 49,515 to 49,985 _RS05915 HMPREF1058_RS05910: HMPREF1058_RS05910 - galactose mutarotase, at 50,172 to 51,305 _RS05910 HMPREF1058_RS0119820: HMPREF1058_RS0119820 - hypothetical protein, at 51,446 to 51,675 _RS0119820 HMPREF1058_RS05905: HMPREF1058_RS05905 - sigma-70 family RNA polymerase sigma factor, at 51,940 to 52,485 _RS05905 HMPREF1058_RS05900: HMPREF1058_RS05900 - autotransporter outer membrane beta-barrel domain-containing protein, at 52,482 to 53,720 _RS05900 HMPREF1058_RS05895: HMPREF1058_RS05895 - class I SAM-dependent methyltransferase, at 53,778 to 54,566 _RS05895 HMPREF1058_RS05890: HMPREF1058_RS05890 - class I SAM-dependent rRNA methyltransferase, at 55,218 to 56,402 _RS05890 HMPREF1058_RS05885: HMPREF1058_RS05885 - 3'-5' exonuclease domain-containing protein 2, at 56,392 to 57,042 _RS05885
Locus Name Description Strand Phenotype
HMPREF1058_RS05930 HMPREF1058_RS05930 MFS transporter - strong
HMPREF1058_RS05925 HMPREF1058_RS05925 DUF5024 domain-containing protein - sig.
HMPREF1058_RS05920 HMPREF1058_RS05920 hypothetical protein - insig.
HMPREF1058_RS05915 HMPREF1058_RS05915 sigma-70 family RNA polymerase sigma factor - insig.
HMPREF1058_RS05910 HMPREF1058_RS05910 galactose mutarotase - insig.
HMPREF1058_RS0119820 HMPREF1058_RS0119820 hypothetical protein - insig.
HMPREF1058_RS05905 HMPREF1058_RS05905 sigma-70 family RNA polymerase sigma factor + insig.
HMPREF1058_RS05900 HMPREF1058_RS05900 autotransporter outer membrane beta-barrel domain-containing protein + cofit
HMPREF1058_RS05895 HMPREF1058_RS05895 class I SAM-dependent methyltransferase + insig.
HMPREF1058_RS05890 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase - sig.
HMPREF1058_RS05885 HMPREF1058_RS05885 3'-5' exonuclease domain-containing protein 2 - strong

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