Protein Info for HMPREF1058_RS0119525 in Phocaeicola vulgatus CL09T03C04

Annotation: DUF4971 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF16341: DUF4971" amino acids 38 to 111 (74 residues), 53.9 bits, see alignment E=1.7e-18 PF00722: Glyco_hydro_16" amino acids 193 to 348 (156 residues), 42.4 bits, see alignment E=5.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZZ28 at UniProt or InterPro

Protein Sequence (354 amino acids)

>HMPREF1058_RS0119525 DUF4971 domain-containing protein (Phocaeicola vulgatus CL09T03C04)
MRVFLLMTMLLGLNVFSVQAKDDESLIKSFTLIKWDAVAHAKINEKECLLEFKHLPSGNL
VTGVNYELAKGVSISPNPQDFVGKWPKEVVFTLKKGKKEVKYKMVLCDYVSANEYELGSW
KLIWNEEFNEEWIDWTVWSKTPRQNSNWNDTMTDDEELYDMKDGRVVLYGRDNIDNKEDS
SPYLTGGLWGLNKVAFSLGRVDICAKFDCAKGFWPAVWLLPQGNSEPYSGGGEIDMMEHL
NFDNFVYQTIHSRYTNLVNKVNPKNHVKPFVNINDFNVYSVEVHTDKLVFLINNEVTYEY
PRITPKDPSQFPFDRNDYYVVLSSQIGGEWVGEVDLKGKIVKLEVDWVRVYQQK