Protein Info for HMPREF1058_RS01150 in Phocaeicola vulgatus CL09T03C04

Annotation: sel1 repeat family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 22 to 23 (2 residues), see Phobius details PF08238: Sel1" amino acids 67 to 101 (35 residues), 29.9 bits, see alignment 3.2e-11 amino acids 103 to 137 (35 residues), 41.8 bits, see alignment 5.2e-15 amino acids 138 to 173 (36 residues), 21.9 bits, see alignment 1.1e-08 amino acids 175 to 209 (35 residues), 46.2 bits, see alignment 2.2e-16 amino acids 210 to 245 (36 residues), 39.1 bits, see alignment 3.8e-14 amino acids 246 to 281 (36 residues), 47.8 bits, see alignment 6.7e-17

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 99% identity to bvu:BVU_3175)

Predicted SEED Role

"FIG00410327: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I8ZDT7 at UniProt or InterPro

Protein Sequence (307 amino acids)

>HMPREF1058_RS01150 sel1 repeat family protein (Phocaeicola vulgatus CL09T03C04)
MKKKSVIAINLCLIASIVTLFGNKIYMLYIGDYHQLWEEAQTHYVNRQYEKARELLEKIA
RIDTAHHAQYLTGDMYLKGLGGEIDYDKALKLFHQSAAGGNTYAENNIGFMYTYGLGVTK
DYSQAFKWLNKAATQGNPEAQIGMGSLYKNGWGVRKDCYIAMTWYLRSVAHGNTDAMNNI
GYLYKNGLGVPQDFEEAYFWFKKAADKNNPIAQYNIGNMYCYGEGMEKDFAKGAEWLTKA
ALQGNAPAQYNLGRMYQWGKGVEKDLQQARFWFQKAIDNGHEKAKEALTKIKSDLSKEDT
EDPLLFT