Protein Info for H281DRAFT_06136 in Paraburkholderia bryophila 376MFSha3.1

Annotation: D-galactonate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 141 (24 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 247 to 270 (24 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 317 to 337 (21 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 393 (363 residues), 172.7 bits, see alignment E=5.5e-55

Best Hits

Swiss-Prot: 50% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 79% identity to bgd:bgla_2g25240)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>H281DRAFT_06136 D-galactonate transporter (Paraburkholderia bryophila 376MFSha3.1)
MSSHPAMSVDANRTSADATFRKAAWRFMPLLFVCYVVAYLDRVNVGFAKLQMLNDLHFSE
AVYGLGAGLFFVGYFFFEVPSNLLLHRVGARRWIARIMVTWAMLSLATAWVTTPTMFYVV
RFLLGIAEAGFYPGMILYLTYWFPSHRRGKMMAVLTAGNPVSGMLGGPLSGFIMHSFSGV
AGHAGWQWLFIIEAVPAVLLGVIVYFFLDDRVKDARWLSDEEKVQITQEISGDAAKRTHG
SVKDAFASGWVWLLCLILFGIIMGSYAIGFWQPTIIRASGVNDPLTVGLLTVIPYTFALI
SMILVGRSADRHRERRWHVSAPALVAAVGFCICAFSGNQLVPAMVGLSLAAAGIISALPM
FWALPTSFLGGTAAAAGIALINSTGNLAGFVSPSVMGWLKTETHSLTSGLYLVAGSLTLS
AILILMFMPARVVNR