Protein Info for H281DRAFT_06070 in Paraburkholderia bryophila 376MFSha3.1

Annotation: FimV C-terminal domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 322 to 341 (20 residues), see Phobius details TIGR03504: FimV C-terminal domain" amino acids 725 to 768 (44 residues), 59 bits, see alignment 1.8e-20

Best Hits

KEGG orthology group: None (inferred from 69% identity to bgf:BC1003_4592)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (772 amino acids)

>H281DRAFT_06070 FimV C-terminal domain-containing protein (Paraburkholderia bryophila 376MFSha3.1)
MNLRLSSLRAMFARPDTGRLAVAAALAVMLAGAASSSAIAAPVDAASAPDGGLVSASGTA
AVSSAAGGQYTVRPGQSLNDVAIAVTQSHDRATLARAARALFDANPSAFMGHDPSRMRLG
SVLNVPALDASGAVAASATGSASAPTADSGSSSNAAVGSGASSAAPGNAAAASAAGGQSP
ATQAATSPAVQGSASDASSVVSSDAASSGAATAAGSQAASAASGTHVWAGSVQPSASEAA
AATGASQPRAQVSSLQQLLALKNRVLMELQKHGIGKAPAAPVAPVASGTQSAGGASSAAV
VPDRSGTGTTTSNDTGISQTNLAIAAAVGAALVVLLTALRLGRRKRERLAQEEHAASADG
IAASGVAEQSNRIAPADEVVEPNLTDADAAAAQHAAAMAAAEREAAEGEAAAREMSERVA
VEREAEIRAAASREAEARQAAEQGAAERDTAQFATDEVAGVRDMAQPAAEHEPSADFAAS
NAELSDDHAAPAEAAALEQSELPPAQIHHELDAATTVASLDAAAELGADALPRAPLEPLE
QVNEAWEPEPLSHRLEWDDEPLPAEPMEPLSPQPLATTAQVHDDQVDTPAQPAAADQPRV
QAPADFPRDALDAFGSLDMPLPPRVESAAETVHAPESLSTQPVASQEATARQAVLPPDAD
EAPHAADEIAAGTAGRAAVAGLGAGNLGTAGFGALKLDFDLELPPSPAQPLPAFTPADLA
RIARNKLDLAAEYIELGDLAGARTLINEVIESNDPATRNDARALLSTLAPLS