Protein Info for H281DRAFT_05979 in Paraburkholderia bryophila 376MFSha3.1

Annotation: transcriptional regulator, TetR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF00440: TetR_N" amino acids 31 to 77 (47 residues), 58.7 bits, see alignment 4e-20 PF17939: TetR_C_30" amino acids 127 to 224 (98 residues), 67.9 bits, see alignment E=9.5e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (274 amino acids)

>H281DRAFT_05979 transcriptional regulator, TetR family (Paraburkholderia bryophila 376MFSha3.1)
MKTEREKKASARTGNSAQEQEHAPGTRLSAILNAAERVFGEHGYAGASMRNIAEEAGVAQ
ALVHYHYATKDKLYEAVFERRSSAINQHRGKLLDALFASESTATVEDVLTIAFTPLSEIF
HGEDAVNLALYVQLVASVSLGSDERSRRIRETYYDPIAERFIDALHTVLPGIAREQAVWA
YLFSVGARQQAHALNGRAMRLGARDRARKSTAHYSDLVRFAAAGIRELVRNESGTNARSK
EPEGRVAKLSSGRTKKSQTSTVANTPTRSVRGRE