Protein Info for H281DRAFT_05976 in Paraburkholderia bryophila 376MFSha3.1

Annotation: D-galactonate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 103 to 119 (17 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details amino acids 326 to 346 (21 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 383 to 406 (24 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 403 (367 residues), 163.9 bits, see alignment E=2.6e-52

Best Hits

KEGG orthology group: None (inferred from 53% identity to har:HEAR2120)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>H281DRAFT_05976 D-galactonate transporter (Paraburkholderia bryophila 376MFSha3.1)
MSRKIALDVHAPAQVTAPEDTQHALYLKVAMRLVPLLIVCYVIAYLDRINVGFAKLQMQD
ALGFSDAVYGLGAGIFFIGYFLFEVPSNLLLQRIGARKTITRIMVLWGLTGCAMATVSSP
TAFYVLRFLLGVFEAGFFPGVVYFLSQWFPRNRRGQILGLFMTGFPIAGMIGGPVSGWAM
SRLAGVAGLAGWQWLYIVEAAPAVLLGIVTWFTLSDDIERAKWLTEPERDTLRHALRDDG
REAGAEHAGQLRQVIADPKVYVISFAYFTFICGTYALSFWVPTVLKSAGATSVERIGWLS
AIPYGIATIGMVLICRNSDRLLERRWHGALAALAGATALSLLPLLAHDLTATIVLLTIAS
TTVFVTIPLLWSLASDYFAGSPVAAPAIAFVNSLGLLGGFASPFAMGWLKTLSGTLNIGL
FLMTTLLALGACAMLCVRVGHQTSR