Protein Info for H281DRAFT_05964 in Paraburkholderia bryophila 376MFSha3.1

Annotation: D-galactonate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 23 to 40 (18 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 342 to 362 (21 residues), see Phobius details amino acids 369 to 396 (28 residues), see Phobius details amino acids 408 to 427 (20 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 393 (363 residues), 165.2 bits, see alignment E=2.1e-52

Best Hits

Swiss-Prot: 51% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 66% identity to hse:Hsero_2252)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>H281DRAFT_05964 D-galactonate transporter (Paraburkholderia bryophila 376MFSha3.1)
MLKSTYGDVVSPAHSEDRTYAKVTWRLIPFLFLCYVFAYLDRVNVGFAKLQMLTDLKFSE
TIYGLGAGIFFIGYFIFEVPSNIALHRFGARKWIARIMLSWGVLSGAMIFVKTPTAFYAL
RFLLGVAEAGFFPGIILYLTYWYPSSRRGKITAMFMTGIPIAGVIGGPLSGWILNSFSGV
HGMAGWRWLFLLEALPSIFGGIAVLLYLDDRISAAKWLTDEEKSLLETGLTKEAGHIEVH
SASGAFTNKRVWVLCLCYFGIIMGLYGISFWLPTLIKASGVSDAFNVGLLTMIPYGAAAI
AMVLLGRSSDRSKERRWHVALPAVIGAAGLVASTLVPHNVTSAVVSLTFATIGILGALCQ
FWSIPPAFLGGVAAAAGIALINSVGNLAGFVSPYLVGWIKDMTHSTDMGLYCVAVSLVVA
AVVVLTMPKGVVNR