Protein Info for H281DRAFT_05959 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Sugar phosphate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 43 to 63 (21 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details amino acids 303 to 323 (21 residues), see Phobius details amino acids 335 to 353 (19 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 390 to 412 (23 residues), see Phobius details amino acids 422 to 443 (22 residues), see Phobius details PF07690: MFS_1" amino acids 47 to 409 (363 residues), 150.9 bits, see alignment E=2.2e-48 amino acids 272 to 452 (181 residues), 39.2 bits, see alignment E=2.1e-14

Best Hits

Swiss-Prot: 51% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 92% identity to bph:Bphy_6030)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>H281DRAFT_05959 Sugar phosphate permease (Paraburkholderia bryophila 376MFSha3.1)
MTMSHTLRADGATRQTETPPIAGMASEDYAASERTLAKAFRRILPFIFICYVISYLDRTN
VGFAALTMNKDLGLTSEQFGFGAGLFFIGYFLFEIPSNLIMQKVGARVWIARIMITWGLF
SMATAFVVGPKSFAAARFLLGLAEAGFTPGIYLYFTHWFPGKWRAKVTAAFLVGIPVANM
IGSPVSGALLELGGLHGLRSWQWLLLIEGGPAVLLGIACLFVLADRPEKAKWLTDEEKSS
LAKRLALEQGDIGARHGSTLRDAMTNWRVFVLAFINFCGIVGSLGVGLWMPQIIKQFGVA
HTVVGWLTAIPYAIGAVVMLWWARVANRSQNRIPYVAGALVVAAAALCASTFLDAPVLKL
IALCFTVSGILAFQATYWAIPSSFLTGRAAAGGLALIVSVGNLGGFVGPSMIGALKQLSG
GFTVPLLAVSGVLLLGALTIAWLGDPGADAGEAPSAHKV