Protein Info for H281DRAFT_05940 in Paraburkholderia bryophila 376MFSha3.1

Annotation: polysaccharide transporter, PST family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 253 to 269 (17 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 333 to 351 (19 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details amino acids 386 to 405 (20 residues), see Phobius details PF01943: Polysacc_synt" amino acids 7 to 276 (270 residues), 166.6 bits, see alignment E=8.1e-53 PF13440: Polysacc_synt_3" amino acids 34 to 326 (293 residues), 41.8 bits, see alignment E=8.5e-15

Best Hits

KEGG orthology group: K03328, polysaccharide transporter, PST family (inferred from 91% identity to bgf:BC1003_5596)

Predicted SEED Role

"FIG00466917: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>H281DRAFT_05940 polysaccharide transporter, PST family (Paraburkholderia bryophila 376MFSha3.1)
MTTPIRKTLLYLILIQGGNYIVPLLMLPYLGHVLGAREFGVLAYCQAVAQYMVLLTDYGF
NFTATRHVSVNRGDPRGLAEVYTSTSAARLVLVMGALVLIVAGVLFVPDLREHADVLAAL
FLGIVANAVTPIWLFQGLERMRALVLPTFLSRLVGLVFVYFAVRGPGDAALAALGVSLGN
VLLAICALWILHRNRLVKLVGTSTRKIVEALKDGFPLFLSFVLISFYVNFNSILLNYFHG
PEVVGQFAMADKIRVAAQAMFMVISQAFYPRISQYHATDPQAAQRLMRMAMLAVFSTSIS
LFIGIELLAAWGIETWIGPQFHASIPLLRLEAVLPPIISVAVVFGDLGLLAQGRARSLTN
VFVGATVLHLLYVVPLTRYGGAKGTIVAVILTEVVGAVAFVWLYFRGVAPTSRGAGRSPV
APSAGQEPRGADAG