Protein Info for H281DRAFT_05892 in Paraburkholderia bryophila 376MFSha3.1

Annotation: carbohydrate ABC transporter substrate-binding protein, CUT1 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF01547: SBP_bac_1" amino acids 43 to 354 (312 residues), 80.6 bits, see alignment E=2.2e-26 PF13416: SBP_bac_8" amino acids 48 to 379 (332 residues), 84.8 bits, see alignment E=8.9e-28

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 97% identity to bpy:Bphyt_5638)

Predicted SEED Role

"Dihydroxyacetone ABC transport system, substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MK93 at UniProt or InterPro

Protein Sequence (443 amino acids)

>H281DRAFT_05892 carbohydrate ABC transporter substrate-binding protein, CUT1 family (Paraburkholderia bryophila 376MFSha3.1)
MLRLTSARVIAAGIIALGLGMAPGAQAQDKQLTLCWAAWDPANALVELSKDFTTKTGIKM
KFEFVPWTSYADRFINELNSHGKLCDLIIGDSQWIGGAAVNGHYVKLNDFFAKNKISMND
FVPATVVGYAEWPKNTPNYWALPAMADAVGWTYRKDWFARPELRAEFKQKYKRELEPPTT
LDELKQTAEFFQGRKIDGKTVYGVYIFTERGSEGITMGVTNALYNFGFEYQDPKKPYHLD
GFVNSPGAVKGLEYYKALYKCCTAPGMTNAYMQEGLDAFKSGQVAMQMNWFAFFPGLYKD
PNVGGDKIGFFVNPRETKQYTQLGGQGISVVAYSDHKDDALEYIKWFAQPDVQKKWWQLG
GYSAAKSVVDAPDFPKSAPFAPAFLKSMSIVKDFWAEPTYAELLLDMQKRVHDYVVADKG
TAKEALDLLVKDWNKVFKAEGKN