Protein Info for H281DRAFT_05871 in Paraburkholderia bryophila 376MFSha3.1

Annotation: amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 64 to 81 (18 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 184 to 207 (24 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 12 to 109 (98 residues), 104.7 bits, see alignment E=1.6e-34 PF00528: BPD_transp_1" amino acids 34 to 214 (181 residues), 77.7 bits, see alignment E=4.9e-26

Best Hits

Swiss-Prot: 38% identical to YECS_SHIFL: L-cystine transport system permease protein YecS (yecS) from Shigella flexneri

KEGG orthology group: None (inferred from 85% identity to bge:BC1002_0399)

MetaCyc: 38% identical to cystine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-290 [EC: 7.4.2.12]; 7.4.2.12 [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]; 7.4.2.- [EC: 7.4.2.12]

Predicted SEED Role

"polar amino acid ABC transporter, inner membrane subunit"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MK73 at UniProt or InterPro

Protein Sequence (238 amino acids)

>H281DRAFT_05871 amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-) (Paraburkholderia bryophila 376MFSha3.1)
MNYQWLTLWGYVPEFLKAGWLTLQVTLLSFVLALALGLIAALASMSPSAIVRFIARAYVE
AIRNTPVLLQIFIVFFGLPSMGIALDAYWAGVIALGVNVGAYLSEVFRAGMQSVPRGQIE
AAGILGLERGQIFKEIVMPQAARAVYPAIVNYLIQLLLGTSLLSAIALPELTGTATVINS
RTLLYVQTFAVVLVAYLVLSNVLSWIASQLGARMFHPPLIVRPGARWAGFTLRRANRA