Protein Info for H281DRAFT_05856 in Paraburkholderia bryophila 376MFSha3.1

Annotation: ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF05138: PaaA_PaaC" amino acids 5 to 267 (263 residues), 313 bits, see alignment E=7.3e-98 TIGR02158: phenylacetate-CoA oxygenase, PaaI subunit" amino acids 14 to 267 (254 residues), 283.3 bits, see alignment E=9.4e-89

Best Hits

KEGG orthology group: K02611, phenylacetic acid degradation protein (inferred from 90% identity to bgf:BC1003_3261)

Predicted SEED Role

"Phenylacetate-CoA oxygenase, PaaI subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>H281DRAFT_05856 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC (Paraburkholderia bryophila 376MFSha3.1)
MNITPEHLQYVLRLADTALVLGQRNSEWCGHGPILEEDIALSNMSLDLIGQARLLYTHAA
SLEQQLTGKTRTEDDYAYFRAEREFTNYTLAELPHCGPLSATAQVEKDYAVTIVRNFLYS
TLMAHLWTALTQSTDAQLAAIASKSIKEASYHVHHASEWLIRFGDGTDESHRRAQDALDY
LLPYTREFFSTDPVEETIATLGIGPLTADLEAAWLDDVRATLDQATLTLPEAVKHVTTGK
HGEHSEHMGFVLAEMQSLARQHPGATW