Protein Info for H281DRAFT_05836 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Threonine/homoserine/homoserine lactone efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 64 (25 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 195 to 213 (19 residues), see Phobius details PF01810: LysE" amino acids 16 to 211 (196 residues), 129 bits, see alignment E=8.2e-42

Best Hits

KEGG orthology group: None (inferred from 88% identity to bug:BC1001_3320)

Predicted SEED Role

"Homoserine/homoserine lactone efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MEI6 at UniProt or InterPro

Protein Sequence (215 amino acids)

>H281DRAFT_05836 Threonine/homoserine/homoserine lactone efflux protein (Paraburkholderia bryophila 376MFSha3.1)
MSLHTWWLFAATVFVVCAIPGPNMLLVMTHGARHGLRRTGATMAGCLSALVLMLAVSAAG
LGVFLEAWPALFNALRFIGAAYLVYLGIKAWRAPADETAGTEAATNADDRAAKPVRSPFA
LFRNGFLVSGSNPKAILFAAALLPQFIDASLPKLPQFGILVATFAVLEVSWYFVYAGFGT
RIGSRLKSRNVARMFNRLTGGVFVGFGAMMALVRH