Protein Info for H281DRAFT_05795 in Paraburkholderia bryophila 376MFSha3.1

Annotation: Outer membrane protein OmpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 transmembrane" amino acids 172 to 192 (21 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details PF06078: DUF937" amino acids 9 to 140 (132 residues), 52.8 bits, see alignment E=6.2e-18 PF00691: OmpA" amino acids 509 to 607 (99 residues), 70.2 bits, see alignment E=1.7e-23

Best Hits

Predicted SEED Role

"outer membrane protein OmpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (615 amino acids)

>H281DRAFT_05795 Outer membrane protein OmpA (Paraburkholderia bryophila 376MFSha3.1)
MSINLIHAIQSALTDEVVGQLGARIGLPPEAARSVMSTAAPALLAGLMQRAATLEGARSL
FATVVSPDVNARIAEQLPHLTGSTGGVSELESAGRGLLERSLDRRAESLSDEVAAQTGVP
AHATHAITGIVGATMLGVLKQHLLKSQGNVGQLPVLLSHQMPLIAPYLNDRLLAALGLGS
VGAFAGSVLAQLKAVSAHIEQPTPAAKPAPEVTAAVQVPADAVVGEKRRSHAWLWWPLLA
IIAAAMALVYLFPGGFPRGQWSGGAAVSGAERSADAQSASAPVAASGELAAVAASSDAAA
SNAAGAIEALDAASSTAGVSASAAGAGSAPVGGASAASATSAARQPGVAVPPTKDSQLAF
AVGESGKPTLTATVGSEAEKTQLVDELTKRLGQYNYAANIAVDPATKPASWLPRLDGLMP
LMSVPGAELRLDGTHVELSGAAANAKLGWLNTLKSLFGAPYETGTFDADNAIQQATANFR
SAIKALLAPGATCAAADVAKVLNLQVINFTSASAHVPTSAAEDLNQSARVLNACARNGRA
AKLEVAGYSDNVGGEQANLQLSKQRAEAVRTYLVKTGAPADSLSAQGYGQAHPMQSNDTA
SGRFANRRIEFAAQQ