Protein Info for H281DRAFT_05761 in Paraburkholderia bryophila 376MFSha3.1

Annotation: flagella basal body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF17656: ChapFlgA_N" amino acids 321 to 393 (73 residues), 71.2 bits, see alignment E=1.2e-23 TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 384 to 519 (136 residues), 130.2 bits, see alignment E=2.6e-42 PF13144: ChapFlgA" amino acids 397 to 518 (122 residues), 104.8 bits, see alignment E=4.8e-34 PF08666: SAF" amino acids 398 to 458 (61 residues), 44.7 bits, see alignment E=2.4e-15

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 78% identity to bug:BC1001_3396)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (520 amino acids)

>H281DRAFT_05761 flagella basal body P-ring formation protein FlgA (Paraburkholderia bryophila 376MFSha3.1)
MDQHTFDPTHRAQRAAAHRLCAAALRVAARLLLSSSLGVPGAGAAVLCAPAAAMLIANAA
NAGEADGPIVIAGPNEKDPAALTELAEHMQAAPAKRAGSAATLAAATAQSLTRGSTTRDA
DPFCRAANASGSIVIAGSGEAPAAPQMIRTSFKPDANGVVTIPAPGRAGSAATNATSAAS
VDEMPASRRVVPVVVTPAPQANGVRQAAGVQPVAANAPTSVTGRAAAAASQALGASATDS
FDTLASRGEPPQLGADGKLIPARSNAPANSTRAAAASPTARVAAARPIAAAPAPAPAQQN
QRAAAPAQPEPLPGQQDAEAIRTTALAFLQQQSAGLPGKVDITVAPAFPRGLAACMVLEP
FMPSGARLWGRVTVGVRCAGQRPWTIYLQARISLHATYYLAGRAMSPGEVLTAADLVARE
GDLTGLPQAIVTDPSQAVGSVTLTRVSAGMPLRRDMLKSASAVSIGQTVRVVAAGEGFAI
SSEGSAMNNASPGQQVRVKTPNGQVISGIVKDGATVEIQL