Protein Info for H281DRAFT_05744 in Paraburkholderia bryophila 376MFSha3.1

Annotation: methyl-accepting chemotaxis sensory transducer with TarH sensor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 617 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details PF02203: TarH" amino acids 1 to 173 (173 residues), 159.1 bits, see alignment E=2.2e-50 PF12729: 4HB_MCP_1" amino acids 5 to 187 (183 residues), 37.7 bits, see alignment E=3.3e-13 PF00672: HAMP" amino acids 213 to 261 (49 residues), 35.7 bits, see alignment 1.7e-12 PF00015: MCPsignal" amino acids 326 to 483 (158 residues), 186.9 bits, see alignment E=5.6e-59

Best Hits

KEGG orthology group: None (inferred from 87% identity to bug:BC1001_3413)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (617 amino acids)

>H281DRAFT_05744 methyl-accepting chemotaxis sensory transducer with TarH sensor (Paraburkholderia bryophila 376MFSha3.1)
MLSRWSIRTSLTLVGIILVALTMVVGVLGLTALGSASKSLDRIARGDLVAIHALDDASAY
LLRSRVSLDRFTALTAAGDTETAKKVLDRAVELYGFSNKNWQTYVDAPKTGVDQAQMDEL
LARRTALVRDGMEPEFAALRANDMAAYHAIADTKISPMFVSYDNVASVVIKNLQQQAVDQ
QADAQSNISLMTTLIIAFATLALLLVIGLRFALRGLIVQPLQDATECFERIAAGDLSEAI
EVKSRNEIGRLFAGIKRMQESMASMVTAVRSSTESIDTGAREIAMGNTDLSQRTEQQAAS
LQETASSMEQLTGTVRQNAENARQASQLAVNASDIATRGGEVVSQVVTTMQDIASSSSKV
VDIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSASAAKEIKELI
GDSTDKVQSGSALVGRAGTTMDEIVQAVRRVTDIMGEISAASEEQSGGIEQVNRAVVQMD
EVTQQNAALVEEAAAAAGSLEDQTRQLQAVLSGWKVASSPARSFAAQAEPQVKARAAVSK
SKTVAKSAARPAQPAAATANAVTAGGTASASGNHEAGAARVEPALKPKTPPAASAPAPRP
AAASVASAGSDADWETF