Protein Info for H281DRAFT_05738 in Paraburkholderia bryophila 376MFSha3.1

Annotation: flagellar transcriptional activator FlhC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF05280: FlhC" amino acids 1 to 172 (172 residues), 302.1 bits, see alignment E=5.7e-95

Best Hits

Swiss-Prot: 86% identical to FLHC_BURSC: Flagellar transcriptional regulator FlhC (flhC) from Burkholderia sp. (strain CCGE1002)

KEGG orthology group: K02402, flagellar transcriptional activator FlhC (inferred from 97% identity to bug:BC1001_3419)

Predicted SEED Role

"Flagellar transcriptional activator FlhC" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MF49 at UniProt or InterPro

Protein Sequence (186 amino acids)

>H281DRAFT_05738 flagellar transcriptional activator FlhC (Paraburkholderia bryophila 376MFSha3.1)
MAYKSVVLEVREITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS
TDWFMTWQPNFHSSLFYNIYRFMADHGGCATIQSIVKSYRLYLEHVQLHEDEPVLSLTRA
WTLVRFFDSGMLQITPCCRCGGHFVAHAHDPKHGFICGLCQPPSRAGKTKKVADARARES
LAALAA