Protein Info for H281DRAFT_05701 in Paraburkholderia bryophila 376MFSha3.1

Annotation: glycerol 3-phosphate ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF00005: ABC_tran" amino acids 20 to 162 (143 residues), 117.9 bits, see alignment E=8e-38 PF17912: OB_MalK" amino acids 236 to 290 (55 residues), 50.1 bits, see alignment 6.4e-17 PF08402: TOBE_2" amino acids 283 to 353 (71 residues), 43.1 bits, see alignment E=5.7e-15

Best Hits

Swiss-Prot: 95% identical to UGPC_PARXL: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 95% identity to bxe:Bxe_A0445)

MetaCyc: 51% identical to ABC-type 3-(6-sulfo-alpha-D-quinovosyl)-sn-glycerol transporter ATP-binding subunit (Agrobacterium fabrum)
7.5.2.M1 [EC: 7.5.2.M1]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.20 or 7.5.2.M1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MFJ5 at UniProt or InterPro

Protein Sequence (362 amino acids)

>H281DRAFT_05701 glycerol 3-phosphate ABC transporter ATP-binding protein (Paraburkholderia bryophila 376MFSha3.1)
MAALTLQGVKKTYDGKQFVLHGIDVDVNDGEFVVMVGPSGCGKSTLLRMVAGLERISEGT
ISIAGKVVNELEPKDRNIAMVFQNYALYPHMSVAENMGYALKIAGVDRAQIAQRVNAAAQ
ILELEPLLQRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDARLRVQMRLEIQRL
HARLATTSLYVTHDQIEAMTLAQRVIVMNKGHAEQIGAPTEVYERPATVFVAGFIGSPGM
NLLEGRVSDDGSTFDVAGNGPQLPLAGVASIGREVAKGREWTLGIRPEHMSPGQADAPHT
TLTVDSCELLGADNLAHGRWGKHDVTARLPHAHRPAAGEALQVALPARHLHFFDPASGRR
VN