Protein Info for H281DRAFT_05602 in Paraburkholderia bryophila 376MFSha3.1

Annotation: cytochrome c biogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 644 to 662 (19 residues), see Phobius details PF05140: ResB" amino acids 27 to 697 (671 residues), 501.1 bits, see alignment E=1.9e-154

Best Hits

KEGG orthology group: K07399, cytochrome c biogenesis protein (inferred from 94% identity to bug:BC1001_3248)

Predicted SEED Role

"Cytochrome c-type biogenesis protein Ccs1/ResB" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MEB5 at UniProt or InterPro

Protein Sequence (732 amino acids)

>H281DRAFT_05602 cytochrome c biogenesis protein (Paraburkholderia bryophila 376MFSha3.1)
MSVTTSGLQSKSSNRIVRNVVEVLSSMRFAIALLVILSIASIIGTVLTQDDPYPNYVNQF
GPFWADIFRALSLYTVYSSWWFMLILGFLMVSVSLCVIRNAPKMIADTKSWKDKVREASL
RAFHHKGEFAVHGTRAQTSAVLARLSAKLGYKFVTRESDGATLIAAKRGALTKLGYISAH
IAIVVICLGGLLDSNLPIKLQMWLFDKSPIRANTVINDIPPEHRLSQSNPTFRGYAWVPE
GQHVSTAILNQPDGSLIQDLPFSIELQKFIVDYYSTGMPKLFASDIVVVDHKTGARVPAR
IEVNKPFEYDGVSIYQSSFQDGGSQMQMTAYPMTGPSAKTAPFGGTIGGNAPLSSATSLA
DGQTVEFTDFRAINVENISNGSGQTDARGVAAHRSLKEAFDERLGSGAKTSKPLDLHNVG
PSVQYKVRDKDGQAREYNNYMLPVAVAGERFFLAGMRLNPDDPFRYLRIPADSGGTVKDW
MNLRATLENPGMRAQAAHRFAQRSVPEANTELQQHLEESALRVLTLFAGADNTVKMPNGQ
PVGGFQAIAGFIDHSVPKGEQEKAAGLLLRMLEGSMWDLWQLSRQQVGEPEAQANADSSR
FVQSSINAISDSFLYGSPVYLQLDSFKQVQASVFQLTRAPGKKVVYLGSLLLVLGIFSMF
YVRERRLWFWLKDTEQGTNVVMAMSSARKTLDFEKEFVQTRDAVGAALGAKLTDASSGNA
GTPSASSQDSTR