Protein Info for H281DRAFT_05600 in Paraburkholderia bryophila 376MFSha3.1

Annotation: cell division checkpoint GTPase YihA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 9 to 201 (193 residues), 214.4 bits, see alignment E=5.6e-68 PF01926: MMR_HSR1" amino acids 27 to 149 (123 residues), 67 bits, see alignment E=8e-23

Best Hits

Swiss-Prot: 95% identical to ENGB_PARPJ: Probable GTP-binding protein EngB (engB) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K03978, GTP-binding protein (inferred from 95% identity to bpy:Bphyt_3612)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A2Z5MEM3 at UniProt or InterPro

Protein Sequence (217 amino acids)

>H281DRAFT_05600 cell division checkpoint GTPase YihA (Paraburkholderia bryophila 376MFSha3.1)
MSFLLHQSRFFTTVNHLRDLPATAQPEIAFAGRSNAGKSTAINILCNQKRLAFASKTPGR
TQHINYFSVGKADEPTAHLVDLPGYGYAEVPGAAKAHWEALLSTYLQSRSQLRGMILMMD
SRRPLTDLDRRMIEWFAPTGKPIHALLTKCDKLTRQESVNALRATQKGFDEYRAAGYQGE
LTAQLFSALKRVGIDEAHELIESWLIPETKGATDAAQ